Create boxes from error bars using PatchCollection#

In this example, we snazz up a pretty standard error bar plot by adding a rectangle patch defined by the limits of the bars in both the x- and y- directions. To do this, we have to write our own custom function called make_error_boxes. Close inspection of this function will reveal the preferred pattern in writing functions for matplotlib:

an Axes object is passed directly to the function
the function operates on the Axes methods directly, not through the pyplot interface
plotting keyword arguments that could be abbreviated are spelled out for better code readability in the future (for example we use facecolor instead of fc)
the artists returned by the Axes plotting methods are then returned by the function so that, if desired, their styles can be modified later outside of the function (they are not modified in this example).

import matplotlib.pyplot as plt
import numpy as np

from matplotlib.collections import PatchCollection
from matplotlib.patches import Rectangle

# Number of data points
n = 5

# Dummy data
np.random.seed(19680801)
x = np.arange(0, n, 1)
y = np.random.rand(n) * 5.

# Dummy errors (above and below)
xerr = np.random.rand(2, n) + 0.1
yerr = np.random.rand(2, n) + 0.2


def make_error_boxes(ax, xdata, ydata, xerror, yerror, facecolor='r',
                     edgecolor='none', alpha=0.5):

    # Loop over data points; create box from errors at each point
    errorboxes = [Rectangle((x - xe[0], y - ye[0]), xe.sum(), ye.sum())
                  for x, y, xe, ye in zip(xdata, ydata, xerror.T, yerror.T)]

    # Create patch collection with specified colour/alpha
    pc = PatchCollection(errorboxes, facecolor=facecolor, alpha=alpha,
                         edgecolor=edgecolor)

    # Add collection to Axes
    ax.add_collection(pc)

    # Plot errorbars
    artists = ax.errorbar(xdata, ydata, xerr=xerror, yerr=yerror,
                          fmt='none', ecolor='k')

    return artists


# Create figure and Axes
fig, ax = plt.subplots(1)

# Call function to create error boxes
_ = make_error_boxes(ax, x, y, xerr, yerr)

plt.show()

[errorbars and boxes]

Tags: plot-type: errorbar component: rectangle component: patchcollection domain: statistics

References

The use of the following functions, methods, classes and modules is shown in this example:

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