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#
include
"
mathzone_add1.h
"
#
include
"
timer.h
"
#
include
"
mathzone.h
"
#
include
"
global_variable.h
"
#
include
"
constants.h
"
#
include
"
global_function.h
"
#
include
"
math_sphbes.h
"
#
if
defined __FFTW2
#
include
"
fftw.h
"
#
elif
defined __FFTW3
#
include
"
fftw3.h
"
//
mohan update 2021-05-06
#
define
c_re
(
c
) ((c)[
0
])
#
define
c_im
(
c
) ((c)[
1
])
#
else
#
include
<
fftw3-mpi.h
>
//
#include "fftw3-mpi_mkl.h"
#
define
c_re
(
c
) ((c)[
0
])
#
define
c_im
(
c
) ((c)[
1
])
#
endif
typedef
fftw_complex
FFTW_COMPLEX
;
//
#include <unistd.h>
#
ifdef
_OPENMP
#
include
<
omp.h
>
#
endif
namespace
ModuleBase
{
double
** Mathzone_Add1::c_ln_c =
nullptr
;
double
** Mathzone_Add1::c_ln_s =
nullptr
;
Mathzone_Add1::Mathzone_Add1
()
{}
Mathzone_Add1::~Mathzone_Add1
()
{}
double
Mathzone_Add1::factorial
(
const
int
& l)
{
if
(l ==
0
|| l ==
1
)
return
1.0
;
else
return
l*
factorial
(l-
1
);
}
double
Mathzone_Add1::dualfac
(
const
int
& l)
{
if
(l == -
1
|| l ==
0
)
return
1.0
;
else
return
l *
dualfac
(l-
2
);
}
void
Mathzone_Add1::SplineD2
//
modified by pengfei 13-8-8 add second derivative as a condition
(
const
double
*rad,
const
double
*rad_f,
const
int
& mesh,
const
double
&yp1,
//
if yp1 > ypmax, consider the second derivative
const
double
&ypn,
double
* y2
)
{
ModuleBase::timer::start
(
"
Mathzone_Add1
"
,
"
SplineD2
"
);
double
dx1 =
0.0
, dx2 =
0.0
, dy1 =
0.0
, dy2 =
0.0
, p =
0.0
, qn =
0.0
, sig =
0.0
, un =
0.0
;
double
* u =
nullptr
;
u =
new
double
[mesh-
1
];
const
double
ypmax =
99999.00
;
if
(yp1 > ypmax)
{
y2[
0
] =
0.0
;
u[
0
] =
0.0
;
}
else
{
y2[
0
] = -
0.5
;
dx1 = rad[
1
] - rad[
0
];
dy1 = rad_f[
1
] - rad_f[
0
];
u[
0
] = (
3.0
/ dx1 ) * (dy1 / dx1 - yp1);
}
for
(
int
i =
1
; i < mesh-
1
; i++)
{
dx1 = rad[i] - rad[i-
1
];
dx2 = rad[i+
1
] - rad[i-
1
];
dy1 = rad_f[i+
1
] - rad_f[i];
dy2 = rad_f[i] - rad_f[i-
1
];
sig = dx1 / dx2;
p = sig * y2[i-
1
] +
2.0
;
y2[i] = (sig -
1.0
) / p;
u[i] = dy1 / (dx2 - dx1) - dy2 / dx1;
u[i] = (
6.0
* u[i] / dx2 - sig * u[i-
1
]) / p;
}
if
(ypn > ypmax)
{
qn = un =
0.0
;
}
else
{
dx1 = rad[mesh-
1
] - rad[mesh-
2
];
dy1 = rad_f[mesh-
1
] - rad_f[mesh-
2
];
qn =
0.5
;
un =
3.0
/ dx1 * (ypn - dy1 / dx1);
}
y2[mesh-
1
] = (un - qn * u[mesh-
2
]) / (qn * y2[mesh-
2
] +
1.0
);
for
(
int
i = mesh-
2
; i >=
0
; i--)
{
y2[i] = y2[i] * y2[i+
1
] + u[i];
}
delete[]
u;
ModuleBase::timer::end
(
"
Mathzone_Add1
"
,
"
SplineD2
"
);
}
//
Peize Lin add openmp 2019-12-13
void
Mathzone_Add1::Cubic_Spline_Interpolation
(
const
double
*
const
rad,
const
double
*
const
rad_f,
const
double
*
const
y2,
const
int
& mesh,
const
double
*
const
r,
const
int
& rsize,
double
*
const
y,
double
*
const
dy
)
{
ModuleBase::timer::start
(
"
Mathzone
"
,
"
cubic_spline
"
);
#
ifdef
_OPENMP
#
pragma
omp parallel for schedule(static)
#
endif
for
(
int
m =
0
; m < rsize ; m++)
{
int
klo =
0
;
int
khi = mesh-
1
;
while
(khi - klo >
1
)
{
const
int
k = (khi + klo) /
2
;
if
(rad[k] > r[m]) khi = k;
else
klo = k;
}
const
double
h = rad[khi] - rad[klo];
if
(h ==
0.0
)
{
std::cout <<
"
Cubic_Spline_Interpolation, h == 0.0 so that cannot be divided
"
<< std::endl;
//
ModuleBase::WARNING_QUIT("Cubic_Spline_Interpolation","h == 0.0 so that cannot be divided");
exit
(
0
);
}
const
double
a = (rad[khi] - r[m]) / h;
const
double
b = (r[m] - rad[klo]) / h;
const
double
dy_tmp = (rad_f[khi] - rad_f[klo]) / h -
(
3.0
* a * a -
1.0
) /
6.0
* h * y2[klo] +
(
3.0
* b * b -
1.0
) /
6.0
* h * y2[khi];
dy[m] = dy_tmp;
const
double
y_tmp = a * rad_f[klo] + b * rad_f[khi] + ((a*a*a - a) * y2[klo] + (b*b*b - b) * y2[khi]) * (h*h) /
6.0
;
y[m] = y_tmp;
//
const double ddy_tmp = a * y2[klo] + b * y2 [khi];
//
ddy[m] = ddy_tmp;
}
ModuleBase::timer::end
(
"
Mathzone
"
,
"
cubic_spline
"
);
}
//
/ Interpolation for Numerical Orbitals
double
Mathzone_Add1::Uni_RadialF
(
const
double
* old_phi,
const
int
& msh,
const
double
& dr,
const
double
& newr
)
{
double
h1 =
0.0
, h2 =
0.0
, h3 =
0.0
, f1 =
0.0
, f2 =
0.0
, f3 =
0.0
, f4 =
0.0
;
double
g1 =
0.0
, g2 =
0.0
, x1 =
0.0
, x2 =
0.0
, y1 =
0.0
, y2 =
0.0
, f =
0.0
;
double
result =
0.0
;
double
rmax = (msh-
1
) * dr;
if
(newr <
0.0
)
{
throw
std::runtime_error
(
"
newr should >= 0.
"
+
std::string
(__FILE__)+
"
line
"
+
std::to_string
(__LINE__));
}
else
if
( rmax <= newr )
{
f =
0.0
;
}
else
{
//
the old position.
const
int
m =
static_cast
<
int
> (newr / dr) +
1
;
//
Spline like interpolation
if
(m ==
1
)
{
h2 = dr;
h3 = dr;
f2 = old_phi[m-
1
];
f3 = old_phi[m];
f4 = old_phi[m+
1
];
h1 = -(h2+h3);
f1 = f4;
}
else
if
(m == (msh-
1
))
{
h1 = dr;
h2 = dr;
f1 = old_phi[m-
2
];
f2 = old_phi[m-
1
];
f3 = old_phi[m];
h3 = -(h1+h2);
f4 = f1;
}
else
{
h1 = dr;
h2 = dr;
h3 = dr;
f1 = old_phi[m-
2
];
f2 = old_phi[m-
1
];
f3 = old_phi[m];
f4 = old_phi[m+
1
];
}
//
Calculate the value at newr
g1 = ((f3-f2)*h1/h2 + (f2-f1)*h2/h1)/(h1+h2);
g2 = ((f4-f3)*h2/h3 + (f3-f2)*h3/h2)/(h2+h3);
x1 = newr - (m-
1
)*dr;
x2 = newr - m*dr;
y1 = x1/h2;
y2 = x2/h2;
f = y2*y2*(
3.0
*f2 + h2*g1 + (
2.0
*f2 + h2*g1)*y2)
+ y1*y1*(
3.0
*f3 - h2*g2 - (
2.0
*f3 - h2*g2)*y1);
}
result = f;
return
result;
}
void
Mathzone_Add1::Uni_Deriv_Phi
(
const
double
*radf,
const
int
&mesh,
const
double
&dr,
const
int
&nd,
double
*phind
)
{
ModuleBase::timer::start
(
"
Mathzone_Add1
"
,
"
Uni_Deriv_Phi
"
);
int
FFT_NR
=
2
*mesh-
1
;
//
FFT_NR = 16019
//
std::cout << "\n mesh=" << mesh << ", radf[8010]=" << radf[8010] << ", radf[8009]=" << radf[8009] ;
//
mesh=8010, radf[8010]=4.396478951532926e-01, radf[8009]=0.000000000000000e+00
fftw_complex *fft_phir =
new
fftw_complex[
FFT_NR
];
fftw_complex *fft_phik =
new
fftw_complex[
FFT_NR
];
fftw_complex *fft_ndphik =
new
fftw_complex[
FFT_NR
];
fftw_complex *fft_ndphir =
new
fftw_complex[
FFT_NR
];
fftw_plan p1;
fftw_plan p2;
//
//CAREFUL: POINT 0 is OF GOOD IMPORTANCE
//
for (int ir = 0; ir < FFT_NR/2; ++ir)
//
{
//
fft_phir[ir].re = radf[ir];
//
fft_phir[ir].im = 0.0;
//
}
//
for (int ir = FFT_NR/2; ir < FFT_NR; ++ir)
//
{
//
int jr = FFT_NR - ir;
//
fft_phir[ir].re = radf[jr];
//
fft_phir[ir].im = 0.0;
//
}
//
//
second call: different value at [8010]; FFT_NR = 16019, FFT_NR/2=8009 ::
//
CAREFUL: POINT 0 is OF GOOD IMPORTANCE
for
(
int
ir =
0
; ir <
FFT_NR
/
2
; ++ir)
//
ik = 0 1 ... 8008
{
c_re
(fft_phir[ir]) = radf[ir];
c_im
(fft_phir[ir]) =
0.0
;
}
for
(
int
ir =
FFT_NR
/
2
; ir <
FFT_NR
; ++ir)
//
ir = 8009 8010 ... 16018
{
//
int jr = FFT_NR - ir ; // jr = 8010 8009 ... 1
int
jr =
FFT_NR
- ir -
1
;
//
-> 8009 8008 ... 0
c_re
(fft_phir[ir]) = radf[jr];
c_im
(fft_phir[ir]) =
0.0
;
}
//
FFTW
#
if
defined __FFTW3
//
std::cout << "\n Call FFTW3 ";
p1 =
fftw_plan_dft_1d
(
FFT_NR
, fft_phir, fft_phik,
FFTW_FORWARD
,
FFTW_ESTIMATE
);
fftw_execute
(p1);
//
fftw_destroy_plan(p1);
#
elif
defined __FFTW2
//
std::cout << "\n Call FFTW2 ";
p1 =
fftw_create_plan
(
FFT_NR
,
FFTW_FORWARD
,
FFTW_ESTIMATE
);
fftw_one
(p1, fft_phir, fft_phik);
//
fftw_destroy_plan(p1);
#
endif
double
dk_uniform = ModuleBase::
TWO_PI
/
FFT_NR
/ dr;
//
for (int ik = 0; ik < FFT_NR/2; ik++)
//
{
//
double kp = ik * dk_uniform;
//
fft_ndphik[ik].re = pow(kp, nd) * fft_phik[ik].re;
//
fft_ndphik[ik].im = 0.0;
//
}
//
for (int ik = FFT_NR/2; ik < FFT_NR; ik++)
//
{
//
double kp = -(FFT_NR - ik)* dk_uniform;
//
fft_ndphik[ik].re = pow(kp, nd) * fft_phik[ik].re;
//
fft_ndphik[ik].im = 0.0;
//
}
for
(
int
ik =
0
; ik <
FFT_NR
/
2
; ik++)
//
ik = 0 1 ... 8008
{
double
kp = ik * dk_uniform;
c_re
(fft_ndphik[ik]) =
pow
(kp, nd) *
c_re
(fft_phik[ik]);
c_im
(fft_ndphik[ik]) =
0.0
;
}
for
(
int
ik =
FFT_NR
/
2
; ik <
FFT_NR
; ik++)
//
ik = 8009 8010 ... 16018
{
//
double kp = -(FFT_NR - ik )* dk_uniform; //(...) = 8010 8009 ... 1
double
kp = -(
FFT_NR
- ik -
1
)* dk_uniform;
//
(...) -> 8009 8008 ... 0
c_re
(fft_ndphik[ik]) =
pow
(kp, nd) *
c_re
(fft_phik[ik]);
c_im
(fft_ndphik[ik]) =
0.0
;
}
#
if
defined __FFTW3
p2 =
fftw_plan_dft_1d
(
FFT_NR
, fft_ndphik, fft_ndphir,
FFTW_BACKWARD
,
FFTW_ESTIMATE
);
fftw_execute
(p2);
//
fftw_destroy_plan(p2);
#
elif
defined __FFTW2
p2 =
fftw_create_plan
(
FFT_NR
,
FFTW_BACKWARD
,
FFTW_ESTIMATE
);
fftw_one
(p2, fft_ndphik, fft_ndphir);
//
fftw_destroy_plan(p2);
#
endif
bool
is_re =
true
;
double
fac =
0.0
;
if
(nd %
4
==
0
)
{
is_re =
true
;
fac =
1.0
;
}
else
if
(nd %
4
==
1
)
{
is_re =
false
;
fac = -
1.0
;
}
else
if
(nd %
4
==
2
)
{
is_re =
true
;
fac = -
1.0
;
}
else
{
is_re =
false
;
fac =
1.0
;
}
for
(
int
ir =
0
; ir < mesh; ir++)
{
if
(is_re)
{
phind[ir] = fac *
c_re
(fft_ndphir[ir]) /
FFT_NR
;
}
else
{
phind[ir] = fac *
c_im
(fft_ndphir[ir]) /
FFT_NR
;
}
}
fftw_destroy_plan
(p1);
fftw_destroy_plan
(p2);
delete []
fft_phir;
delete []
fft_phik;
delete []
fft_ndphik;
delete []
fft_ndphir;
ModuleBase::timer::end
(
"
Mathzone_Add1
"
,
"
Uni_Deriv_Phi
"
);
}
}
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