HydroModPy/install/setup_wsl_dev.sh at dev · HydroModPy/HydroModPy · GitHub

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#!/usr/bin/env bash

set -euo pipefail

usage() {

cat <<'EOF'

Usage: bash install/setup_wsl_dev.sh [options]

Create or update a Linux/WSL developer environment for HydroModPy.

Options:

--env-name NAME Conda environment name (default: hydromodpy-wsl)

--full Use the full editable stack with Spyder/Jupyter extras

--with-petsc Install PETSc, petsc4py, mpi4py, and mpich in the env

--skip-apt Do not install Ubuntu system dependencies with apt

-h, --help Show this help and exit

Examples:

bash install/setup_wsl_dev.sh

bash install/setup_wsl_dev.sh --env-name hydromodpy-linux --with-petsc

bash install/setup_wsl_dev.sh --full

EOF

}

ENV_NAME="hydromodpy-wsl"

ENV_FILE="env_hydromodpy_light_pkg.yml"

WITH_PETSC=0

USE_APT=1

while [[ $# -gt 0 ]]; do

case "$1" in

--env-name)

ENV_NAME="$2"

shift 2

;;

--full)

ENV_FILE="env_hydromodpy_pkg.yml"

shift

;;

--with-petsc)

WITH_PETSC=1

shift

;;

--skip-apt)

USE_APT=0

shift

;;

-h|--help)

usage

exit 0

;;

echo "Unknown option: $1" >&2

usage >&2

exit 2

;;

esac

done

SCRIPT_DIR="$(cd -- "$(dirname -- "${BASH_SOURCE[0]}")" && pwd)"

REPO_ROOT="$(cd -- "${SCRIPT_DIR}/.." && pwd)"

if [[ ! -f "${SCRIPT_DIR}/${ENV_FILE}" ]]; then

echo "Environment file not found: ${SCRIPT_DIR}/${ENV_FILE}" >&2

exit 1

if ! command -v conda >/dev/null 2>&1; then

cat >&2 <<'EOF'

conda was not found in this shell.

Install Miniforge inside WSL first, for example:

sudo apt update && sudo apt install -y curl

curl -L -O https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge3-Linux-x86_64.sh

bash Miniforge3-Linux-x86_64.sh

source ~/miniforge3/etc/profile.d/conda.sh

EOF

exit 1

if [[ "${USE_APT}" -eq 1 ]] && command -v apt-get >/dev/null 2>&1; then

APT_PREFIX=""

if command -v sudo >/dev/null 2>&1; then

APT_PREFIX="sudo"

${APT_PREFIX} apt-get update

${APT_PREFIX} apt-get install -y libglu1-mesa

pushd "${SCRIPT_DIR}" >/dev/null

if ! conda env create -n "${ENV_NAME}" -f "${ENV_FILE}"; then

conda env update -n "${ENV_NAME}" -f "${ENV_FILE}" --prune

popd >/dev/null

# gmsh wheels on Linux can require libXft at runtime. Installing the conda

# package keeps the fix inside the environment and avoids an extra system

# dependency beyond libglu1-mesa.

conda install -n "${ENV_NAME}" -c conda-forge -y xorg-libxft

if [[ "${WITH_PETSC}" -eq 1 ]]; then

conda install -n "${ENV_NAME}" -c conda-forge -y petsc petsc4py mpi4py mpich

conda run -n "${ENV_NAME}" python -c "from petsc4py import PETSc; print('PETSc', PETSc.Sys.getVersion())"

conda run -n "${ENV_NAME}" python "${SCRIPT_DIR}/verify_dev_env.py" \

--dist-name hydromodpy \

--expected-editable-root "${REPO_ROOT}" \

--require-docs \

--require-tests

cat <<EOF

Environment ready: ${ENV_NAME}

Repository root: ${REPO_ROOT}

Suggested next commands:

conda activate ${ENV_NAME}

export MPLBACKEND=Agg

python -m pytest tests/unit -q

hmp test regression --fast -j 2

hmp test validation --fast

EOF

HydroModPy/install/setup_wsl_dev.sh at dev · HydroModPy/HydroModPy · GitHub

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