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Commits · SelfHacked/htslib · GitHub

This repository was archived by the owner on Jun 3, 2021. It is now read-only.

Commits

Commits on Jan 7, 2021

Remove knet. (PR #1200)
jkbonfield
authored
cecf738

Commits on Jan 6, 2021

Filter "qlen" tweak, add seq/qual/library, and add functions.

jkbonfield
authored and
valeriuo
committed
c7c433f
Add missing return to HTS_OPT_COMPRESSION_LEVEL option.

jkbonfield
authored and
valeriuo
committed
fc2d03e
Filter tidy ups from review.

jkbonfield
authored and
valeriuo
committed
2c75c10
Add a general SAM/BAM/CRAM input filter option (HTS_OPT_SAM_FILTER).

jkbonfield
authored and
valeriuo
committed
999d181
Replaced bam_construct_seq() with bam_set1().

anderskaplan
authored and
jkbonfield
committed
44787d9

Commits on Jan 4, 2021

Don't set $host_alias as that confuses autoconf 2.70

jmarshall
authored and
jkbonfield
committed
78441c9

Commits on Dec 17, 2020

docs: fix simple typo, seperated -> separated
timgates42
committed
246c146

Commits on Dec 15, 2020

Don't link plugins with libhts.dylib on macOS

jmarshall
authored and
daviesrob
committed
7ca2b49

Commits on Dec 8, 2020

Set lines to be skipped independently.

valeriuo
authored and
daviesrob
committed
b581944

Commits on Dec 6, 2020

Use $(ALL_CPPFLAGS), similarly to samtools's Makefile
jmarshall
committed
7ad1ec2

Commits on Dec 1, 2020

Fix the bgzf_idx_flush assertion. (PR #1168)
jkbonfield
authored
238600d

Commits on Nov 30, 2020

Recode to use const char pointers

jmarshall
authored and
jkbonfield
committed
2056490
Adjust parser for undefined CIGAR.

valeriuo
authored and
jkbonfield
committed
8c7eccf

Commits on Nov 20, 2020

Make bam_itr_next an alias for sam_itr_next.

valeriuo
authored and
daviesrob
committed
51275bc

Commits on Nov 18, 2020

Extract the CIGAR parsing logic into separate methods for each of the two

valeriuo
authored and
jkbonfield
committed
9a55e4e

Commits on Nov 9, 2020

Prevent GCC -Wextra switch/case statement "fall through" warnings

jmarshall
authored and
whitwham
committed
7f8211c

Commits on Nov 6, 2020

Fix memory leak on bad input in vcf_parse_info()
daviesrob
committed
b710781

Commits on Nov 5, 2020

Fix assumption of pthread_t being a non-structure.

jkbonfield
authored and
daviesrob
committed
0ad12d7
Add Cirrus-CI integration (PR #1175)
jkbonfield
authored
21b677e

Commits on Nov 3, 2020

Fix a long-standing typo in hts_lrand48.

jkbonfield
authored and
daviesrob
committed
b211b4c

Commits on Nov 2, 2020

Update Windows image version in .appveyor.yml
daviesrob
committed
ca25304

Commits on Oct 23, 2020

Use temporary filename for bam_set1() test file
jmarshall
committed
90f27ab
Add bam_set1() function and unit tests (PR #1159)
anderskaplan
authored
c917518

Commits on Oct 21, 2020

Adjust the min offset of a bin when unmapped placed reads detected.

valeriuo
authored and
jkbonfield
committed
49059d3

Commits on Oct 7, 2020

Added new test and data for CRLF line endings.

whitwham
authored and
daviesrob
committed
2264113
Improved documentation of kgetline() and kgetline2() in the header file.

anderskaplan
authored and
daviesrob
committed
81eca5e
Added test cases for kgetline() and kgetline2().

anderskaplan
authored and
daviesrob
committed
ed198a5
Bug fix: handling of CRLF line terminators in sam_parse_worker().

anderskaplan
authored and
daviesrob
committed
ff495a9

Commits on Oct 6, 2020

Replace the indexing range check error message. (#1151)
jkbonfield
authored
14a8359

Commits on Oct 5, 2020

Variable name used in dlsym corrected.

whitwham
authored and
daviesrob
committed
30d82d6

Commits on Sep 25, 2020

Include <unistd.h> and <errno.h> directly where needed
jmarshall
committed
450c912

Commits on Sep 24, 2020

Update hts.c

andrewpatto
authored and
jkbonfield
committed
3c1ea37

Commits on Sep 22, 2020

Merge version number bump and NEWS file from master
valeriuo
committed
1814ae3
Release 1.11
valeriuo
committed
a7a90fe

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