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fix: Write highlight output if VCF or BED is provided by fxwiegand · Pull Request #393 · alignoth/alignoth · GitHub

fix: Write highlight output if VCF or BED is provided - #393

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fxwiegand merged 1 commit into
mainfrom
fix-highlight-data-output
Oct 28, 2025
Merged

fxwiegand merged 1 commit into
mainfrom
fix-highlight-data-output

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This pull request updates the logic for determining when to generate a highlight file in src/main.rs. The change broadens the conditions under which a highlight file is created to include the presence of VCF or BED files, not just the highlight option.

Highlight file generation logic:

  • The condition for creating a highlight file now checks if any of opt.highlight, opt.vcf, or opt.bed are provided, instead of only opt.highlight. ([src/main.rsL133-R133](https://github.com/alignoth/alignoth/pull/393/files#diff-42cb6807ad74b3e201c5a7ca98b911c5fa08380e942be6e4ac5807f8377f87fcL133-R133))

fxwiegand merged commit 0ee280f into main Oct 28, 2025
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fxwiegand deleted the fix-highlight-data-output branch October 28, 2025 14:47

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Codecov Report

❌ Patch coverage is 0% with 1 line in your changes missing coverage. Please review.
✅ Project coverage is 50.54%. Comparing base (56dc564) to head (62847d5).
⚠️ Report is 2 commits behind head on main.

Files with missing lines Patch % Lines
src/main.rs 0.00% 1 Missing ⚠️
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Additional details and impacted files
@@           Coverage Diff           @@
##             main     #393   +/-   ##
=======================================
  Coverage   50.54%   50.54%           
=======================================
  Files           6        6           
  Lines         647      647           
=======================================
  Hits          327      327           
  Misses        320      320           

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