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fix: Clip reads extending beyond reference bounds by fxwiegand · Pull Request #422 · alignoth/alignoth · GitHub

fix: Clip reads extending beyond reference bounds - #422

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fxwiegand merged 1 commit into
mainfrom
clip-reads
Jan 30, 2026
Merged

fxwiegand merged 1 commit into
mainfrom
clip-reads

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Should fix #421.

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Codecov Report

❌ Patch coverage is 97.14286% with 1 line in your changes missing coverage. Please review.
✅ Project coverage is 51.45%. Comparing base (f4428e3) to head (dc1b72f).

Files with missing lines Patch % Lines
src/plot.rs 97.14% 1 Missing ⚠️
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Additional details and impacted files
@@            Coverage Diff             @@
##             main     #422      +/-   ##
==========================================
+ Coverage   49.12%   51.45%   +2.32%     
==========================================
  Files           6        6              
  Lines         688      723      +35     
==========================================
+ Hits          338      372      +34     
- Misses        350      351       +1     

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fxwiegand merged commit 9e4d955 into main Jan 30, 2026
6 checks passed
fxwiegand deleted the clip-reads branch January 30, 2026 10:32
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How to generate the bam file required for alignoth?

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