alignoth.github.io/.github/workflows/test.yml at main · alignoth/alignoth.github.io · GitHub

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name: test

on:

pull_request:

jobs:

test:

runs-on: ubuntu-latest

defaults:

run:

shell: bash -el {0}

steps:

- uses: actions/checkout@v4

- name: Install stable toolchain

uses: actions-rs/toolchain@v1

with:

toolchain: stable

- name: Install alignoth

run: cargo install alignoth

- name: Checkout alignoth repo

uses: actions/checkout@v4

with:

repository: alignoth/alignoth

path: alignoth

- name: Build preview html

run: alignoth -b alignoth/tests/sample_3/NA12878.bam -r alignoth/tests/sample_3/ref.fa -g 1:250-500 --html --max-read-depth 40 > src/preview.html

- name: locosopa

uses: koesterlab/locosopa@main

with:

config: src/config.yaml

path: build

deploy: "false"

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