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install basemap from conda, fancyimpute from source, remove ggplot · askingalot/docker-python@b3973c7 · GitHub

/ docker-python Public
forked from Kaggle/docker-python

Commit b3973c7

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Chris Crawford
committed
install basemap from conda, fancyimpute from source, remove ggplot
1 parent f23bb48 commit b3973c7

2 files changed

Lines changed: 22 additions & 18 deletions

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‎Dockerfile‎

Lines changed: 21 additions & 14 deletions
Original file line numberDiff line numberDiff line change
@@ -10,6 +10,7 @@ RUN sed -i "s/httpredir.debian.org/debian.uchicago.edu/" /etc/apt/sources.list &
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# https://stackoverflow.com/a/46498173
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conda update -y conda && conda update -y python && \
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pip install --upgrade pip && \
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apt-get -y install cmake && \
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# Vowpal Rabbit
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#apt-get install -y libboost-program-options-dev zlib1g-dev libboost-python-dev && \
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#cd /usr/lib/x86_64-linux-gnu/ && rm -f libboost_python.a && rm -f libboost_python.so && \
@@ -41,7 +42,6 @@ libxcb-render0 libxcb-shm0 netpbm poppler-data p7zip-full && \
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RUN pip install opencv-python
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#apt-get -y install libgtk2.0-dev pkg-config libavcodec-dev libavformat-dev libswscale-dev && \
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#apt-get -y install libtbb2 libtbb-dev libjpeg-dev libtiff-dev libjasper-dev && \
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#apt-get -y install cmake && \
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#cd /usr/local/src && git clone --depth 1 https://github.com/Itseez/opencv.git && \
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#cd opencv && \
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#mkdir build && cd build && \
@@ -154,18 +154,24 @@ vader_lexicon verbnet webtext word2vec_sample wordnet wordnet_ic words ycoe && \
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# Make sure the dynamic linker finds the right libstdc++
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ENV LD_LIBRARY_PATH=/opt/conda/lib
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# Install Basemap via conda temporarily
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RUN apt-get update && \
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# Libgeos, for mapping libraries
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apt-get -y install libgeos-dev && \
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# pyshp and pyproj are now external dependencies of Basemap
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pip install pyshp pyproj && \
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cd /usr/local/src && git clone https://github.com/matplotlib/basemap.git && \
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export GEOS_DIR=/usr/local && \
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cd basemap && python setup.py install && \
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#apt-get -y install libgeos-dev && \
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#pip install matplotlib && \
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#pip install pyshp && \
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#pip install pyproj && \
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#cd /usr/local/src && git clone https://github.com/matplotlib/basemap.git && \
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#cd basemap/geos-3.3.3 && \
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#export GEOS_DIR=/usr/local && \
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#./configure --prefix=$GEOS_DIR && \
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#make && make install && \
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#cd .. && python setup.py install && \
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conda install basemap && \
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# Pillow (PIL)
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apt-get -y install zlib1g-dev liblcms2-dev libwebp-dev && \
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pip install Pillow && \
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cd /usr/local/src && git clone https://github.com/vitruvianscience/opendeep.git && \
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pip install Pillow
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RUN cd /usr/local/src && git clone https://github.com/vitruvianscience/opendeep.git && \
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cd opendeep && python setup.py develop && \
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# sasl is apparently an ibis dependency
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apt-get -y install libsasl2-dev && \
@@ -248,8 +254,6 @@ RUN pip install scipy && \
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apt-get install -y sox libsox-dev libsox-fmt-all && \
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pip install cffi && \
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cd /usr/local/src && git clone https://github.com/pytorch/audio && cd audio && python setup.py install && \
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# ggpy / ggplot
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pip install git+https://github.com/yhat/ggplot.git && \
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# ~~~~ CLEAN UP ~~~~
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rm -rf /root/.cache/pip/* && \
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apt-get autoremove -y && apt-get clean && \
@@ -305,8 +309,11 @@ RUN pip install --upgrade mpld3 && \
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pip install pystan && \
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pip install ImageHash && \
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conda install -y ecos && \
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conda install -y CVXcanon && \
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pip install fancyimpute && \
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conda install -y CVXcanon
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RUN cd /usr/local/src && git clone https://github.com/iskandr/fancyimpute && \
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cd fancyimpute && \
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python setup.py install && \
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pip install git+https://github.com/pymc-devs/pymc3 && \
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pip install tifffile && \
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pip install spectral && \

‎test_build.py‎

Lines changed: 1 addition & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -76,9 +76,6 @@
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import plotly.graph_objs as go
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print("plotly ok")
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from ggplot import *
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print("ggplot ok")
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import theano
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print("Theano ok")
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@@ -149,4 +146,4 @@ def do_GET(s):
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print("shap ok")
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import kmapper
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print("kmapper ok")
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print("kmapper ok")

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