biojava
diff --git a/‎biojava-aa-prop/src/main/java/org/biojava/nbio/aaproperties/Utils.java‎
Lines changed: 1 addition & 1 deletion b/‎biojava-aa-prop/src/main/java/org/biojava/nbio/aaproperties/Utils.java‎
Lines changed: 1 addition & 1 deletion
@@ -89,7 +89,7 @@ public final static boolean doesSequenceContainInvalidChar(String sequence, Set<
 	 */
 	public final static int getNumberOfInvalidChar(String sequence,  Set<Character> cSet, boolean ignoreCase){
 		char[] cArray = ignoreCase ? sequence.toUpperCase().toCharArray(): sequence.toCharArray();
-		final Set<Character> characterSet = cSet == null ? cSet : PeptideProperties.standardAASet;
+		final Set<Character> characterSet = cSet == null ?PeptideProperties.standardAASet: cSet ; 
 		int total = (int)CharBuffer.wrap(cArray).chars().filter(character -> !characterSet.contains((char)character)).count();
 		return total;
 	}
Original file line number	Diff line number	Diff line change
@@ -89,7 +89,7 @@ public final static boolean doesSequenceContainInvalidChar(String sequence, Set<
89	89	*/
90	90	public final static int getNumberOfInvalidChar(String sequence, Set<Character> cSet, boolean ignoreCase){
91	91	char[] cArray = ignoreCase ? sequence.toUpperCase().toCharArray(): sequence.toCharArray();
92		- final Set<Character> characterSet = cSet == null ? cSet : PeptideProperties.standardAASet;
	92	+ final Set<Character> characterSet = cSet == null ?PeptideProperties.standardAASet: cSet ;
93	93	int total = (int)CharBuffer.wrap(cArray).chars().filter(character -> !characterSet.contains((char)character)).count();
94	94	return total;
95	95	}