Commit b5425af
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Update UniprotProxySequenceReader.java
Uniprot has begun adding spaces into the sequence string. We simply strip them out again so we don't get a compound noot found error.1 parent d17f8ef commit b5425af
1 file changed
Lines changed: 1 addition & 1 deletion
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- biojava-core/src/main/java/org/biojava/nbio/core/sequence/loader
Lines changed: 1 addition & 1 deletion
| Original file line number | Diff line number | Diff line change | |
|---|---|---|---|
@@ -149,7 +149,7 @@ public void setCompoundSet(CompoundSet<C> compoundSet) { | |||
| 149 | 149 | public void setContents(String sequence) throws CompoundNotFoundException { | |
| 150 | 150 | // Horrendously inefficient - pretty much the way the old BJ did things. | |
| 151 | 151 | // TODO Should be optimised. | |
| 152 | - this.sequence = sequence; | ||
| 152 | + this.sequence = sequence.replaceAll(" ", ""); | ||
| 153 | 153 | this.parsedCompounds.clear(); | |
| 154 | 154 | for (int i = 0; i < sequence.length();) { | |
| 155 | 155 | String compoundStr = null; | |
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