Commit c54f698
Make BioJava compile under java9
1 parent f7a2a16 commit c54f698
4 files changed
Lines changed: 17 additions & 6 deletions
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- biojava-core/src/main/java/org/biojava/nbio/core/sequence/io/embl
- biojava-protein-disorder
- biojava-structure
Lines changed: 0 additions & 3 deletions
| Original file line number | Diff line number | Diff line change | |
|---|---|---|---|
@@ -20,8 +20,6 @@ | |||
| 20 | 20 | */ | |
| 21 | 21 | package org.biojava.nbio.core.sequence.io.embl; | |
| 22 | 22 | ||
| 23 | - import jdk.nashorn.internal.ir.annotations.Immutable; | ||
| 24 | - | ||
| 25 | 23 | /** | |
| 26 | 24 | * This class contains the processed data of embl file | |
| 27 | 25 | * Primary accession number | |
@@ -35,7 +33,6 @@ | |||
| 35 | 33 | * @author Noor Aldeen Al Mbaidin | |
| 36 | 34 | * @since 5.0.0 | |
| 37 | 35 | */ | |
| 38 | - @Immutable | ||
| 39 | 36 | public class EmblId { | |
| 40 | 37 | ||
| 41 | 38 | ||
| Original file line number | Diff line number | Diff line change | |
|---|---|---|---|
@@ -84,6 +84,10 @@ | |||
| 84 | 84 | <groupId>org.apache.logging.log4j</groupId> | |
| 85 | 85 | <artifactId>log4j-core</artifactId> | |
| 86 | 86 | </dependency> | |
| 87 | + <dependency> | ||
| 88 | + <groupId>javax.xml.bind</groupId> | ||
| 89 | + <artifactId>jaxb-api</artifactId> | ||
| 90 | + </dependency> | ||
| 87 | 91 | </dependencies> | |
| 88 | 92 | ||
| 89 | 93 | <properties> | |
| Original file line number | Diff line number | Diff line change | |
|---|---|---|---|
@@ -62,6 +62,11 @@ | |||
| 62 | 62 | <version>1.1.0</version> | |
| 63 | 63 | </dependency> | |
| 64 | 64 | ||
| 65 | + <dependency> | ||
| 66 | + <groupId>javax.xml.bind</groupId> | ||
| 67 | + <artifactId>jaxb-api</artifactId> | ||
| 68 | + </dependency> | ||
| 69 | + | ||
| 65 | 70 | <!-- logging dependencies (managed by parent pom, don't set versions or | |
| 66 | 71 | scopes here) --> | |
| 67 | 72 | <dependency> | |
| Original file line number | Diff line number | Diff line change | |
|---|---|---|---|
@@ -32,8 +32,8 @@ | |||
| 32 | 32 | </license> | |
| 33 | 33 | </licenses> | |
| 34 | 34 | <properties> | |
| 35 | - <jdk.version>1.8</jdk.version> | ||
| 36 | - <maven.enforcer.jdk-version>1.8</maven.enforcer.jdk-version> | ||
| 35 | + <jdk.version>9</jdk.version> | ||
| 36 | + <maven.enforcer.jdk-version>9</maven.enforcer.jdk-version> | ||
| 37 | 37 | <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding> | |
| 38 | 38 | <project.build.targetEncoding>UTF-8</project.build.targetEncoding> | |
| 39 | 39 | <!-- needed for failsafe plugin in integrationtest module - JD 2018-03-08 --> | |
@@ -507,6 +507,11 @@ | |||
| 507 | 507 | <artifactId>forester</artifactId> | |
| 508 | 508 | <version>1.038</version> | |
| 509 | 509 | </dependency> | |
| 510 | + <dependency> | ||
| 511 | + <groupId>javax.xml.bind</groupId> | ||
| 512 | + <artifactId>jaxb-api</artifactId> | ||
| 513 | + <version>2.3.0</version> | ||
| 514 | + </dependency> | ||
| 510 | 515 | </dependencies> | |
| 511 | 516 | </dependencyManagement> | |
| 512 | 517 | ||
@@ -518,7 +523,7 @@ | |||
| 518 | 523 | <aggregate>true</aggregate> | |
| 519 | 524 | <breakiterator>true</breakiterator> | |
| 520 | 525 | <quiet>true</quiet> | |
| 521 | - <source>1.8</source> | ||
| 526 | + <source>${jdk.version}</source> | ||
| 522 | 527 | <verbose>false</verbose> | |
| 523 | 528 | <linksource>true</linksource> | |
| 524 | 529 | ||
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