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embeddings_utils.py
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embeddings_utils.py
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import
textwrap
as
tr
from
typing
import
List
,
Optional
import
matplotlib
.
pyplot
as
plt
import
plotly
.
express
as
px
from
scipy
import
spatial
from
sklearn
.
decomposition
import
PCA
from
sklearn
.
manifold
import
TSNE
from
sklearn
.
metrics
import
average_precision_score
,
precision_recall_curve
from
tenacity
import
retry
,
stop_after_attempt
,
wait_random_exponential
import
openai
from
openai
.
datalib
.
numpy_helper
import
numpy
as
np
from
openai
.
datalib
.
pandas_helper
import
pandas
as
pd
@
retry
(
wait
=
wait_random_exponential
(
min
=
1
,
max
=
20
),
stop
=
stop_after_attempt
(
6
))
def
get_embedding
(
text
:
str
,
engine
=
"text-similarity-davinci-001"
,
**
kwargs
)
->
List
[
float
]:
# replace newlines, which can negatively affect performance.
text
=
text
.
replace
(
"
\n
"
,
" "
)
return
openai
.
Embedding
.
create
(
input
=
[
text
],
engine
=
engine
,
**
kwargs
)[
"data"
][
0
][
"embedding"
]
@
retry
(
wait
=
wait_random_exponential
(
min
=
1
,
max
=
20
),
stop
=
stop_after_attempt
(
6
))
async
def
aget_embedding
(
text
:
str
,
engine
=
"text-similarity-davinci-001"
,
**
kwargs
)
->
List
[
float
]:
# replace newlines, which can negatively affect performance.
text
=
text
.
replace
(
"
\n
"
,
" "
)
return
(
await
openai
.
Embedding
.
acreate
(
input
=
[
text
],
engine
=
engine
,
**
kwargs
))[
"data"
][
0
][
"embedding"
]
@
retry
(
wait
=
wait_random_exponential
(
min
=
1
,
max
=
20
),
stop
=
stop_after_attempt
(
6
))
def
get_embeddings
(
list_of_text
:
List
[
str
],
engine
=
"text-similarity-babbage-001"
,
**
kwargs
)
->
List
[
List
[
float
]]:
assert
len
(
list_of_text
)
<=
2048
,
"The batch size should not be larger than 2048."
# replace newlines, which can negatively affect performance.
list_of_text
=
[
text
.
replace
(
"
\n
"
,
" "
)
for
text
in
list_of_text
]
data
=
openai
.
Embedding
.
create
(
input
=
list_of_text
,
engine
=
engine
,
**
kwargs
).
data
return
[
d
[
"embedding"
]
for
d
in
data
]
@
retry
(
wait
=
wait_random_exponential
(
min
=
1
,
max
=
20
),
stop
=
stop_after_attempt
(
6
))
async
def
aget_embeddings
(
list_of_text
:
List
[
str
],
engine
=
"text-similarity-babbage-001"
,
**
kwargs
)
->
List
[
List
[
float
]]:
assert
len
(
list_of_text
)
<=
2048
,
"The batch size should not be larger than 2048."
# replace newlines, which can negatively affect performance.
list_of_text
=
[
text
.
replace
(
"
\n
"
,
" "
)
for
text
in
list_of_text
]
data
=
(
await
openai
.
Embedding
.
acreate
(
input
=
list_of_text
,
engine
=
engine
,
**
kwargs
)).
data
return
[
d
[
"embedding"
]
for
d
in
data
]
def
cosine_similarity
(
a
,
b
):
return
np
.
dot
(
a
,
b
)
/
(
np
.
linalg
.
norm
(
a
)
*
np
.
linalg
.
norm
(
b
))
def
plot_multiclass_precision_recall
(
y_score
,
y_true_untransformed
,
class_list
,
classifier_name
):
"""
Precision-Recall plotting for a multiclass problem. It plots average precision-recall, per class precision recall and reference f1 contours.
Code slightly modified, but heavily based on https://scikit-learn.org/stable/auto_examples/model_selection/plot_precision_recall.html
"""
n_classes
=
len
(
class_list
)
y_true
=
pd
.
concat
(
[(
y_true_untransformed
==
class_list
[
i
])
for
i
in
range
(
n_classes
)],
axis
=
1
).
values
# For each class
precision
=
dict
()
recall
=
dict
()
average_precision
=
dict
()
for
i
in
range
(
n_classes
):
precision
[
i
],
recall
[
i
],
_
=
precision_recall_curve
(
y_true
[:,
i
],
y_score
[:,
i
])
average_precision
[
i
]
=
average_precision_score
(
y_true
[:,
i
],
y_score
[:,
i
])
# A "micro-average": quantifying score on all classes jointly
precision_micro
,
recall_micro
,
_
=
precision_recall_curve
(
y_true
.
ravel
(),
y_score
.
ravel
()
)
average_precision_micro
=
average_precision_score
(
y_true
,
y_score
,
average
=
"micro"
)
print
(
str
(
classifier_name
)
+
" - Average precision score over all classes: {0:0.2f}"
.
format
(
average_precision_micro
)
)
# setup plot details
plt
.
figure
(
figsize
=
(
9
,
10
))
f_scores
=
np
.
linspace
(
0.2
,
0.8
,
num
=
4
)
lines
=
[]
labels
=
[]
for
f_score
in
f_scores
:
x
=
np
.
linspace
(
0.01
,
1
)
y
=
f_score
*
x
/
(
2
*
x
-
f_score
)
(
l
,)
=
plt
.
plot
(
x
[
y
>=
0
],
y
[
y
>=
0
],
color
=
"gray"
,
alpha
=
0.2
)
plt
.
annotate
(
"f1={0:0.1f}"
.
format
(
f_score
),
xy
=
(
0.9
,
y
[
45
]
+
0.02
))
lines
.
append
(
l
)
labels
.
append
(
"iso-f1 curves"
)
(
l
,)
=
plt
.
plot
(
recall_micro
,
precision_micro
,
color
=
"gold"
,
lw
=
2
)
lines
.
append
(
l
)
labels
.
append
(
"average Precision-recall (auprc = {0:0.2f})"
""
.
format
(
average_precision_micro
)
)
for
i
in
range
(
n_classes
):
(
l
,)
=
plt
.
plot
(
recall
[
i
],
precision
[
i
],
lw
=
2
)
lines
.
append
(
l
)
labels
.
append
(
"Precision-recall for class `{0}` (auprc = {1:0.2f})"
""
.
format
(
class_list
[
i
],
average_precision
[
i
])
)
fig
=
plt
.
gcf
()
fig
.
subplots_adjust
(
bottom
=
0.25
)
plt
.
xlim
([
0.0
,
1.0
])
plt
.
ylim
([
0.0
,
1.05
])
plt
.
xlabel
(
"Recall"
)
plt
.
ylabel
(
"Precision"
)
plt
.
title
(
f"
{
classifier_name
}
: Precision-Recall curve for each class"
)
plt
.
legend
(
lines
,
labels
)
def
distances_from_embeddings
(
query_embedding
:
List
[
float
],
embeddings
:
List
[
List
[
float
]],
distance_metric
=
"cosine"
,
)
->
List
[
List
]:
"""Return the distances between a query embedding and a list of embeddings."""
distance_metrics
=
{
"cosine"
:
spatial
.
distance
.
cosine
,
"L1"
:
spatial
.
distance
.
cityblock
,
"L2"
:
spatial
.
distance
.
euclidean
,
"Linf"
:
spatial
.
distance
.
chebyshev
,
}
distances
=
[
distance_metrics
[
distance_metric
](
query_embedding
,
embedding
)
for
embedding
in
embeddings
]
return
distances
def
indices_of_nearest_neighbors_from_distances
(
distances
)
->
np
.
ndarray
:
"""Return a list of indices of nearest neighbors from a list of distances."""
return
np
.
argsort
(
distances
)
def
pca_components_from_embeddings
(
embeddings
:
List
[
List
[
float
]],
n_components
=
2
)
->
np
.
ndarray
:
"""Return the PCA components of a list of embeddings."""
pca
=
PCA
(
n_components
=
n_components
)
array_of_embeddings
=
np
.
array
(
embeddings
)
return
pca
.
fit_transform
(
array_of_embeddings
)
def
tsne_components_from_embeddings
(
embeddings
:
List
[
List
[
float
]],
n_components
=
2
,
**
kwargs
)
->
np
.
ndarray
:
"""Returns t-SNE components of a list of embeddings."""
# use better defaults if not specified
if
"init"
not
in
kwargs
.
keys
():
kwargs
[
"init"
]
=
"pca"
if
"learning_rate"
not
in
kwargs
.
keys
():
kwargs
[
"learning_rate"
]
=
"auto"
tsne
=
TSNE
(
n_components
=
n_components
,
**
kwargs
)
array_of_embeddings
=
np
.
array
(
embeddings
)
return
tsne
.
fit_transform
(
array_of_embeddings
)
def
chart_from_components
(
components
:
np
.
ndarray
,
labels
:
Optional
[
List
[
str
]]
=
None
,
strings
:
Optional
[
List
[
str
]]
=
None
,
x_title
=
"Component 0"
,
y_title
=
"Component 1"
,
mark_size
=
5
,
**
kwargs
,
):
"""Return an interactive 2D chart of embedding components."""
empty_list
=
[
""
for
_
in
components
]
data
=
pd
.
DataFrame
(
{
x_title
:
components
[:,
0
],
y_title
:
components
[:,
1
],
"label"
:
labels
if
labels
else
empty_list
,
"string"
: [
"<br>"
.
join
(
tr
.
wrap
(
string
,
width
=
30
))
for
string
in
strings
]
if
strings
else
empty_list
,
}
)
chart
=
px
.
scatter
(
data
,
x
=
x_title
,
y
=
y_title
,
color
=
"label"
if
labels
else
None
,
symbol
=
"label"
if
labels
else
None
,
hover_data
=
[
"string"
]
if
strings
else
None
,
**
kwargs
,
).
update_traces
(
marker
=
dict
(
size
=
mark_size
))
return
chart
def
chart_from_components_3D
(
components
:
np
.
ndarray
,
labels
:
Optional
[
List
[
str
]]
=
None
,
strings
:
Optional
[
List
[
str
]]
=
None
,
x_title
:
str
=
"Component 0"
,
y_title
:
str
=
"Component 1"
,
z_title
:
str
=
"Compontent 2"
,
mark_size
:
int
=
5
,
**
kwargs
,
):
"""Return an interactive 3D chart of embedding components."""
empty_list
=
[
""
for
_
in
components
]
data
=
pd
.
DataFrame
(
{
x_title
:
components
[:,
0
],
y_title
:
components
[:,
1
],
z_title
:
components
[:,
2
],
"label"
:
labels
if
labels
else
empty_list
,
"string"
: [
"<br>"
.
join
(
tr
.
wrap
(
string
,
width
=
30
))
for
string
in
strings
]
if
strings
else
empty_list
,
}
)
chart
=
px
.
scatter_3d
(
data
,
x
=
x_title
,
y
=
y_title
,
z
=
z_title
,
color
=
"label"
if
labels
else
None
,
symbol
=
"label"
if
labels
else
None
,
hover_data
=
[
"string"
]
if
strings
else
None
,
**
kwargs
,
).
update_traces
(
marker
=
dict
(
size
=
mark_size
))
return
chart
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