cmapPy/setup.py at master · cmap/cmapPy · GitHub

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# Always prefer setuptools over distutils

from setuptools import setup, find_packages

# To use a consistent encoding

from codecs import open

from os import path

here = path.abspath(path.dirname(__file__))

setup(

name='cmapPy',

# Versions should comply with PEP440. For a discussion on single-sourcing

# the version across setup.py and the project code, see

# https://packaging.python.org/en/latest/single_source_version.html

version='3.3.3',

description='Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools',

long_description="cmapPy: Tools for interacting with .gctx and .gct files, and other Connectivity Map resources. See our documentation at http://cmappy.readthedocs.io/en/latest/, and for more information on the file formats and available resources, please see clue.io/gctx.",

# The project's main homepage.

url='https://github.com/cmap/cmapPy',

# Author details

maintainer='Oana Enache',

maintainer_email='oana@broadinstitute.org',

# Choose your license

license='BSD 3-clause',

# See https://pypi.python.org/pypi?%3Aaction=list_classifiers

classifiers=[

# How mature is this project? Common values are

# 3 - Alpha

# 4 - Beta

# 5 - Production/Stable

'Development Status :: 5 - Production/Stable',

# Indicate who your project is intended for

'Intended Audience :: Science/Research',

'Topic :: Scientific/Engineering :: Bio-Informatics',

# Pick your license as you wish (should match "license" above)

'License :: OSI Approved :: BSD License',

# Specify the Python versions you support here. In particular, ensure

# that you indicate whether you support Python 2, Python 3 or both.

'Programming Language :: Python :: 2',

'Programming Language :: Python :: 2.7'

# What does your project relate to?

keywords='gct gctx file-manipulation Connectivity Map CMap Broad Institute',

# You can just specify the packages manually here if your project is

# simple. Or you can use find_packages().

packages=find_packages(exclude=['contrib','docs','tutorials', 'tests', 'performance_testing']),

# List run-time dependencies here. These will be installed by pip when

# your project is installed. For an analysis of "install_requires" vs pip's

# requirements files see:

# https://packaging.python.org/en/latest/requirements.html

install_requires=['numpy>=1.11.2', 'pandas>=0.18', 'h5py>=2.6.0', 'requests>=2.13.0', 'six'],

# List additional groups of dependencies here (e.g. development

# dependencies). You can install these using the following syntax,

# for example:

# $ pip install -e .[dev,test]

extras_require={},

# If there are data files included in your packages that need to be

# installed, specify them here. If using Python 2.6 or less, then these

# have to be included in MANIFEST.in as well.

#package_data={},

include_package_data=True, # reads these from MANIFEST.in

# Although 'package_data' is the preferred approach, in some case you may

# need to place data files outside of your packages. See:

# http://docs.python.org/3.4/distutils/setupscript.html#installing-additional-files # noqa

# In this case, 'data_file' will be installed into '<sys.prefix>/my_data'

data_files=[],

# To provide executable scripts, use entry points in preference to the

# "scripts" keyword. Entry points provide cross-platform support and allow

# pip to create the appropriate form of executable for the target platform.

entry_points={'console_scripts': ['gctx2gct=cmapPy.pandasGEXpress.gctx2gct:main', 'gct2gctx=cmapPy.pandasGEXpress.gct2gctx:main',

'concat=cmapPy.pandasGEXpress.concat:main', 'subset=cmapPy.pandasGEXpress.subset:main']},

tests_require=['unittest']

)

cmapPy/setup.py at master · cmap/cmapPy · GitHub

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