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V2.0 (#198) · idefix-code/idefix@19ed7be · GitHub

V2.0 (#198) · idefix-code/idefix@19ed7be · GitHub
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Commit 19ed7be

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V2.0 (#198)
Main new modules introduced by v2.0 - Self-gravity (!186) - Multi-dust species as pressureless fluids (!336) - Passive tracers (!341) - Planet module (planet migration, planet-planet integration) (!278) - Custom equation of states (#185) See Changelog.md for details --------- Co-authored-by: Geoffroy Lesur <> Co-authored-by: Clément Robert <cr52@protonmail.com> Co-authored-by: Marc Van den Bossche <marc.vanden-bossche@univ-grenoble-alpes.fr> Co-authored-by: Clément Robert <cmt.robert@univ-grenoble-alpes.fr> Co-authored-by: Volodia99 <gaylor.wafflard@univ-grenoble-alpes.fr> Co-authored-by: pre-commit-ci-lite[bot] <117423508+pre-commit-ci-lite[bot]@users.noreply.github.com> Co-authored-by: Alankar Dutta <dutta.alankar@gmail.com> Co-authored-by: jeankpf <74673691+jeankpf@users.noreply.github.com>
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‎.gitattributes‎

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This file was deleted.

‎.github/workflows/idefix-ci.yml‎

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@@ -4,6 +4,7 @@ on:
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push:
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branches:
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- master
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- v2.0
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pull_request:
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paths-ignore:
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- '.github/ISSUE_TEMPLATE/*'
@@ -16,132 +17,271 @@ concurrency:
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cancel-in-progress: true
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env:
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TEST_OPTIONS: -DKokkos_ENABLE_CUDA=ON
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TESTME_OPTIONS: -cuda -Werror
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PYTHONPATH: ${{ github.workspace }}
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IDEFIX_DIR: ${{ github.workspace }}
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jobs:
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Linter:
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# Don't do this in forks
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if: github.repository == 'idefix-code/idefix'
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if: ${{ github.repository == 'idefix-code/idefix' || github.repository == 'glesur/idefix' }}
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v3
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with:
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lfs: false
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- uses: actions/setup-python@v4
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with:
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python-version: 3.x
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- uses: pre-commit/action@v3.0.0
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- uses: pre-commit-ci/lite-action@v1.0.0
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if: always()
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Hydrodynamics:
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ShocksHydro:
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needs: Linter
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runs-on: self-hosted
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steps:
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- name: Check out repo
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uses: actions/checkout@v3
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with:
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submodules: recursive
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- name: Sod test
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run: |
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cd $IDEFIX_DIR/test/HD/sod
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./testme.py -all $TESTME_OPTIONS
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- name: Isothermal Sod test
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run: |
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cd $IDEFIX_DIR/test/HD/sod-iso
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./testme.py -all $TESTME_OPTIONS
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- name: Mach reflection test
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run: |
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cd $IDEFIX_DIR/test/HD//MachReflection
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./testme.py -all $TESTME_OPTIONS
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ParabolicHydro:
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needs: Linter
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runs-on: self-hosted
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steps:
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- name: Check out repo
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uses: actions/checkout@v3
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with:
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lfs: true
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submodules: recursive
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# Manually do a git LFS https://github.com/actions/checkout/issues/270
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- run: git lfs pull
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- name: Run Hydro test
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run: cd test && ./checks_hydro.sh $TEST_OPTIONS
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- name: Viscous flow past cylinder
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run: |
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cd $IDEFIX_DIR/test/HD/ViscousFlowPastCylinder
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./testme.py -all $TESTME_OPTIONS
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- name: Viscous disk
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run: |
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cd $IDEFIX_DIR/test/HD/ViscousDisk
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./testme.py -all $TESTME_OPTIONS
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- name: Thermal diffusion
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run: |
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cd $IDEFIX_DIR/test/HD/thermalDiffusion
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./testme.py -all $TESTME_OPTIONS
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Magneto-Hydrodynamics:
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ShocksMHD:
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needs: Linter
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runs-on: self-hosted
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steps:
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- name: Check out repo
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uses: actions/checkout@v3
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with:
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lfs: true
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submodules: recursive
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# Manually do a git LFS https://github.com/actions/checkout/issues/270
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- run: git lfs pull
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- name: Run MHD test
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run: cd test && ./checks_mhd.sh $TEST_OPTIONS
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- name: MHD Sod test
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run: |
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cd $IDEFIX_DIR/test/MHD/sod
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./testme.py -all $TESTME_OPTIONS
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- name: MHD Isothermal Sod test
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run: |
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cd $IDEFIX_DIR/test/MHD/sod-iso
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./testme.py -all $TESTME_OPTIONS
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- name: Orszag Tang
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run: |
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cd $IDEFIX_DIR/test/MHD/OrszagTang
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./testme.py -all $TESTME_OPTIONS
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- name: Orszag Tang 3D+restart tests
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run: |
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cd $IDEFIX_DIR/test/MHD/OrszagTang3D
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./testme.py -all $TESTME_OPTIONS
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MPI:
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ParabolicMHD:
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needs: Linter
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runs-on: self-hosted
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steps:
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- name: Check out repo
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uses: actions/checkout@v3
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with:
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lfs: true
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submodules: recursive
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# Manually do a git LFS https://github.com/actions/checkout/issues/270
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- run: git lfs pull
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- name: Run MPI test
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run: cd test && ./checks_mpi.sh $TEST_OPTIONS
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- name: Ambipolar C Shock
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run: |
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cd $IDEFIX_DIR/test/MHD/AmbipolarCshock
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./testme.py -all $TESTME_OPTIONS
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- name: Ambipolar C Shock 3D
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run: |
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cd $IDEFIX_DIR/test/MHD/AmbipolarCshock3D
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./testme.py -all $TESTME_OPTIONS
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- name: Resistive Alfvén wave
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run: |
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cd $IDEFIX_DIR/test/MHD/ResistiveAlfvenWave
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./testme.py -all $TESTME_OPTIONS
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- name: Hall whistler waves
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run: |
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cd $IDEFIX_DIR/test/MHD/HallWhistler
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./testme.py -all $TESTME_OPTIONS
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Fargo:
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needs: [Linter, ShocksHydro, ParabolicHydro, ShocksMHD, ParabolicMHD]
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runs-on: self-hosted
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steps:
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- name: Check out repo
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uses: actions/checkout@v3
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with:
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submodules: recursive
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- name: Fargo + planet
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run: |
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cd $IDEFIX_DIR/test/HD/FargoPlanet
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./testme.py -all $TESTME_OPTIONS
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- name: Fargo MHD spherical
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run: |
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cd $IDEFIX_DIR/test/MHD/FargoMHDSpherical
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./testme.py -all $TESTME_OPTIONS
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ShearingBox:
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needs: [Linter, ShocksHydro, ParabolicHydro, ShocksMHD, ParabolicMHD]
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runs-on: self-hosted
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steps:
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- name: Check out repo
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uses: actions/checkout@v3
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with:
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submodules: recursive
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- name: Hydro shearing box
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run: |
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cd $IDEFIX_DIR/test/HD/ShearingBox
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./testme.py -all $TESTME_OPTIONS
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- name: MHD shearing box
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run: |
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cd $IDEFIX_DIR/test/MHD/ShearingBox
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./testme.py -all $TESTME_OPTIONS
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SelfGravity:
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needs: [Linter, ShocksHydro, ParabolicHydro, ShocksMHD, ParabolicMHD]
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runs-on: self-hosted
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steps:
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- name: Check out repo
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uses: actions/checkout@v3
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with:
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submodules: recursive
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- name: Jeans Instability
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run: |
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cd $IDEFIX_DIR/test/SelfGravity/JeansInstability
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./testme.py -all $TESTME_OPTIONS
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- name: Random sphere spherical
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run: |
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cd $IDEFIX_DIR/test/SelfGravity/RandomSphere
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./testme.py -all $TESTME_OPTIONS
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- name: Random sphere cartesian
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run: |
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cd $IDEFIX_DIR/test/SelfGravity/RandomSphereCartesian
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./testme.py -all $TESTME_OPTIONS
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- name: Uniform spherical collapse
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run: |
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cd $IDEFIX_DIR/test/SelfGravity/UniformCollapse
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./testme.py -all $TESTME_OPTIONS
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VectorPotential:
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needs: [Linter, Hydrodynamics, Magneto-Hydrodynamics, MPI]
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Planet:
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needs: [Linter, ShocksHydro, ParabolicHydro, ShocksMHD, ParabolicMHD]
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runs-on: self-hosted
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steps:
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- name: Check out repo
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uses: actions/checkout@v3
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with:
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lfs: true
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submodules: recursive
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# Manually do a git LFS https://github.com/actions/checkout/issues/270
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- run: git lfs pull
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- name: Run Vector Potential test
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run: cd test && ./checks_vector_potential.sh $TEST_OPTIONS
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- name: 3 body
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run: |
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cd $IDEFIX_DIR/test/Planet/Planet3Body
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./testme.py -all $TESTME_OPTIONS
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- name: migration
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run: |
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cd $IDEFIX_DIR/test/Planet/PlanetMigration2D
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./testme.py -all $TESTME_OPTIONS
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- name: planet-planet
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run: |
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cd $IDEFIX_DIR/test/Planet/PlanetPlanetRK42D
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./testme.py -all $TESTME_OPTIONS
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- name: spiral wake
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run: |
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cd $IDEFIX_DIR/test/Planet/PlanetSpiral2D
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./testme.py -all $TESTME_OPTIONS
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- name: torques
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run: |
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cd $IDEFIX_DIR/test/Planet/PlanetTorque3D
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./testme.py -all $TESTME_OPTIONS
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- name: RK5
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run: |
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cd $IDEFIX_DIR/test/Planet/PlanetsIsActiveRK52D
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./testme.py -all $TESTME_OPTIONS
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HighOrder:
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needs: [Linter, Hydrodynamics, Magneto-Hydrodynamics, MPI]
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Dust:
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needs: [Linter, ShocksHydro, ParabolicHydro, ShocksMHD, ParabolicMHD]
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runs-on: self-hosted
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steps:
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- name: Check out repo
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uses: actions/checkout@v3
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with:
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lfs: true
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submodules: recursive
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# Manually do a git LFS https://github.com/actions/checkout/issues/270
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- run: git lfs pull
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- name: Run high order test
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run: cd test && ./checks_highorder.sh $TEST_OPTIONS
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- name: Energy conservation
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run: |
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cd $IDEFIX_DIR/test/Dust/DustEnergy
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./testme.py -all $TESTME_OPTIONS
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- name: Dusty wave
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run: |
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cd $IDEFIX_DIR/test/Dust/DustyWave
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./testme.py -all $TESTME_OPTIONS
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SinglePrecision:
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needs: [Linter, Hydrodynamics, Magneto-Hydrodynamics, MPI]
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Braginskii:
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needs: [Linter, ShocksHydro, ParabolicHydro, ShocksMHD, ParabolicMHD]
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runs-on: self-hosted
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steps:
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- name: Check out repo
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uses: actions/checkout@v3
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with:
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lfs: true
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submodules: recursive
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# Manually do a git LFS https://github.com/actions/checkout/issues/270
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- run: git lfs pull
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- name: Run single precision test
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run: cd test && ./checks_singleprecision.sh $TEST_OPTIONS
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- name: MTI
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run: |
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cd $IDEFIX_DIR/test/MHD/MTI
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./testme.py -all $TESTME_OPTIONS
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- name: Spherical anisotropic diffusion
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run: |
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cd $IDEFIX_DIR/test/MHD/sphBragTDiffusion
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./testme.py -all $TESTME_OPTIONS
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- name: Spherical anisotropic viscosity
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run: |
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cd $IDEFIX_DIR/test/MHD/sphBragViscosity
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./testme.py -all $TESTME_OPTIONS
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Examples:
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needs: [VectorPotential, HighOrder,SinglePrecision]
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needs: [Fargo, Dust, Planet, ShearingBox, SelfGravity]
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runs-on: self-hosted
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steps:
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- name: Check out repo
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uses: actions/checkout@v3
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with:
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lfs: true
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submodules: recursive
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# Manually do a git LFS https://github.com/actions/checkout/issues/270
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- run: git lfs pull
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- name: Run examples test
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run: cd test && ./checks_examples.sh $TEST_OPTIONS
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Utils:
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needs: [VectorPotential, HighOrder,SinglePrecision]
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needs: [Fargo, Dust, Planet, ShearingBox, SelfGravity]
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runs-on: self-hosted
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steps:
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- name: Check out repo
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uses: actions/checkout@v3
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with:
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lfs: true
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submodules: recursive
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# Manually do a git LFS https://github.com/actions/checkout/issues/270
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- run: git lfs pull
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- name: Run utils test
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run: cd test && ./checks_utils.sh $TEST_OPTIONS
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- name: Lookup table
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run: |
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cd $IDEFIX_DIR/test/utils/lookupTable
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./testme.py -all $TESTME_OPTIONS
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- name: Dump Image
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run: |
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cd $IDEFIX_DIR/test/utils/dumpImage
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./testme.py -all $TESTME_OPTIONS

‎.gitignore‎

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# generated files
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*.log
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src/gitversion.hpp
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src/version.hpp
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**/libkokkos.a
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**/KokkosCore_config.h
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build
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test/**/KokkosCore*
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test/**/*.csv
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test/**/*.pyc
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test/**/*.dat
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# machine specific cache and hidden files
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.*

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