shell cmd upd · mash4peace/python_reference@cdac474 · GitHub

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rasbt

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shell cmd upd

1 parent 45c931b commit cdac474
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• useful_scripts
  • large_csv_to_sqlite.py

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‎useful_scripts/large_csv_to_sqlite.py‎

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+1-1Lines changed: 1 addition & 1 deletion

Original file line number	Diff line number	Diff line change
@@ -21,7 +21,7 @@
21	21	columns = ['molecule_id','charge','db','drugsnow','hba','hbd','loc','nrb','smiles']
22	22
23	23	# Get number of lines in the CSV file
24		- nlines = subprocess.check_output('wc -l %s' % in_csv, shell=True)
	24	+ nlines = subprocess.check_output(['wc', '-l', in_csv])
25	25	nlines = int(nlines.split()[0])
26	26
27	27	# connect to database

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