Mutation-Simulator/mutation_simulator/defaults.py at master · mkpython3/Mutation-Simulator · GitHub

42 lines (33 loc) · 666 Bytes

from pathlib import Path

from sys import stderr, stdout

from .mut_types import MutType

class Defaults:

"""Holds default values."""

OUTBASE = Path(".")

IGNORE_WARNINGS = False

QUIET = False

if stdout.isatty() and stderr.isatty():

NO_COLOR = False

NO_PROGRESS = False

else:

NO_COLOR = True

NO_PROGRESS = True

SPECIES_NAME = "Unknown"

ASSEMBLY_NAME = "Unknown"

SAMPLE_NAME = "Unknown"

TITV = 1

RATE = 0

BLOCK = 1

MINLEN = 1

MAXLEN = 2

IV_MINLEN = 2

IV_MAXLEN = 3

MUT_BLOCK = {

MutType.SN: BLOCK,

MutType.IN: BLOCK,

MutType.DE: BLOCK,

MutType.IV: BLOCK,

MutType.DU: BLOCK,

MutType.TL: BLOCK,

MutType.TLI: BLOCK,

}

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