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/*
-*- mode: c++; c-basic-offset: 4 -*-
*/
#
ifndef
MPL_NUMPY_CPP_H
#
define
MPL_NUMPY_CPP_H
#
define
PY_SSIZE_T_CLEAN
/*
**************************************************************************
* This file is based on original work by Mark Wiebe, available at:
*
* http://github.com/mwiebe/numpy-cpp
*
* However, the needs of matplotlib wrappers, such as treating an
* empty array as having the correct dimensions, have made this rather
* matplotlib-specific, so it's no longer compatible with the
* original.
*/
#
include
"
py_exceptions.h
"
#
include
<
complex
>
#
ifdef
_POSIX_C_SOURCE
#
undef
_POSIX_C_SOURCE
#
endif
#
ifndef
_AIX
#
ifdef
_XOPEN_SOURCE
#
undef
_XOPEN_SOURCE
#
endif
#
endif
//
Prevent multiple conflicting definitions of swab from stdlib.h and unistd.h
#
if
defined(__sun) || defined(sun)
#
if
defined(_XPG4)
#
undef
_XPG4
#
endif
#
if
defined(_XPG3)
#
undef
_XPG3
#
endif
#
endif
#
include
<
Python.h
>
#
include
<
numpy/ndarrayobject.h
>
namespace
numpy
{
//
Type traits for the NumPy types
template
<
typename
T>
struct
type_num_of
;
/*
Be careful with bool arrays as python has sizeof(npy_bool) == 1, but it is
* not always the case that sizeof(bool) == 1. Using the array_view_accessors
* is always fine regardless of sizeof(bool), so do this rather than using
* array.data() and pointer arithmetic which will not work correctly if
* sizeof(bool) != 1.
*/
template
<>
struct
type_num_of
<
bool
>
{
enum
{
value =
NPY_BOOL
};
};
template
<>
struct
type_num_of
<npy_byte>
{
enum
{
value =
NPY_BYTE
};
};
template
<>
struct
type_num_of
<npy_ubyte>
{
enum
{
value =
NPY_UBYTE
};
};
template
<>
struct
type_num_of
<npy_short>
{
enum
{
value =
NPY_SHORT
};
};
template
<>
struct
type_num_of
<npy_ushort>
{
enum
{
value =
NPY_USHORT
};
};
template
<>
struct
type_num_of
<npy_int>
{
enum
{
value =
NPY_INT
};
};
template
<>
struct
type_num_of
<npy_uint>
{
enum
{
value =
NPY_UINT
};
};
template
<>
struct
type_num_of
<npy_long>
{
enum
{
value =
NPY_LONG
};
};
template
<>
struct
type_num_of
<npy_ulong>
{
enum
{
value =
NPY_ULONG
};
};
template
<>
struct
type_num_of
<npy_longlong>
{
enum
{
value =
NPY_LONGLONG
};
};
template
<>
struct
type_num_of
<npy_ulonglong>
{
enum
{
value =
NPY_ULONGLONG
};
};
template
<>
struct
type_num_of
<npy_float>
{
enum
{
value =
NPY_FLOAT
};
};
template
<>
struct
type_num_of
<npy_double>
{
enum
{
value =
NPY_DOUBLE
};
};
#
if
NPY_LONGDOUBLE != NPY_DOUBLE
template
<>
struct
type_num_of
<npy_longdouble>
{
enum
{
value =
NPY_LONGDOUBLE
};
};
#
endif
template
<>
struct
type_num_of
<npy_cfloat>
{
enum
{
value =
NPY_CFLOAT
};
};
template
<>
struct
type_num_of
<std::
complex
<npy_float> >
{
enum
{
value =
NPY_CFLOAT
};
};
template
<>
struct
type_num_of
<npy_cdouble>
{
enum
{
value =
NPY_CDOUBLE
};
};
template
<>
struct
type_num_of
<std::
complex
<npy_double> >
{
enum
{
value =
NPY_CDOUBLE
};
};
#
if
NPY_CLONGDOUBLE != NPY_CDOUBLE
template
<>
struct
type_num_of
<npy_clongdouble>
{
enum
{
value =
NPY_CLONGDOUBLE
};
};
template
<>
struct
type_num_of
<std::
complex
<npy_longdouble> >
{
enum
{
value =
NPY_CLONGDOUBLE
};
};
#
endif
template
<>
struct
type_num_of
<PyObject *>
{
enum
{
value =
NPY_OBJECT
};
};
template
<
typename
T>
struct
type_num_of
<T &>
{
enum
{
value = type_num_of<T>::value
};
};
template
<
typename
T>
struct
type_num_of
<
const
T>
{
enum
{
value = type_num_of<T>::value
};
};
template
<
typename
T>
struct
is_const
{
enum
{
value =
false
};
};
template
<
typename
T>
struct
is_const
<
const
T>
{
enum
{
value =
true
};
};
namespace
detail
{
template
<
template
<
typename
,
int
>
class
AV
,
typename
T,
int
ND
>
class
array_view_accessors
;
template
<
template
<
typename
,
int
>
class
AV
,
typename
T>
class
array_view_accessors
<
AV
, T,
1
>
{
public:
typedef
AV
<T,
1
>
AVC
;
typedef
T
sub_t
;
T &
operator
()(npy_intp i)
{
AVC
*self =
static_cast
<
AVC
*>(
this
);
return
*
reinterpret_cast
<T *>(self->
m_data
+ self->
m_strides
[
0
] * i);
}
const
T &
operator
()(npy_intp i)
const
{
const
AVC
*self =
static_cast
<
const
AVC
*>(
this
);
return
*
reinterpret_cast
<
const
T *>(self->
m_data
+ self->
m_strides
[
0
] * i);
}
T &
operator
[](npy_intp i)
{
AVC
*self =
static_cast
<
AVC
*>(
this
);
return
*
reinterpret_cast
<T *>(self->
m_data
+ self->
m_strides
[
0
] * i);
}
const
T &
operator
[](npy_intp i)
const
{
const
AVC
*self =
static_cast
<
const
AVC
*>(
this
);
return
*
reinterpret_cast
<
const
T *>(self->
m_data
+ self->
m_strides
[
0
] * i);
}
};
template
<
template
<
typename
,
int
>
class
AV
,
typename
T>
class
array_view_accessors
<
AV
, T,
2
>
{
public:
typedef
AV
<T,
2
>
AVC
;
typedef
AV
<T,
1
>
sub_t
;
T &
operator
()(npy_intp i, npy_intp j)
{
AVC
*self =
static_cast
<
AVC
*>(
this
);
return
*
reinterpret_cast
<T *>(self->
m_data
+ self->
m_strides
[
0
] * i +
self->
m_strides
[
1
] * j);
}
const
T &
operator
()(npy_intp i, npy_intp j)
const
{
const
AVC
*self =
static_cast
<
const
AVC
*>(
this
);
return
*
reinterpret_cast
<
const
T *>(self->
m_data
+ self->
m_strides
[
0
] * i +
self->
m_strides
[
1
] * j);
}
sub_t
subarray
(npy_intp i)
const
{
const
AVC
*self =
static_cast
<
const
AVC
*>(
this
);
return
sub_t
(self->
m_arr
,
self->
m_data
+ self->
m_strides
[
0
] * i,
self->
m_shape
+
1
,
self->
m_strides
+
1
);
}
};
template
<
template
<
typename
,
int
>
class
AV
,
typename
T>
class
array_view_accessors
<
AV
, T,
3
>
{
public:
typedef
AV
<T,
3
>
AVC
;
typedef
AV
<T,
2
>
sub_t
;
T &
operator
()(npy_intp i, npy_intp j, npy_intp k)
{
AVC
*self =
static_cast
<
AVC
*>(
this
);
return
*
reinterpret_cast
<T *>(self->
m_data
+ self->
m_strides
[
0
] * i +
self->
m_strides
[
1
] * j + self->
m_strides
[
2
] * k);
}
const
T &
operator
()(npy_intp i, npy_intp j, npy_intp k)
const
{
const
AVC
*self =
static_cast
<
const
AVC
*>(
this
);
return
*
reinterpret_cast
<
const
T *>(self->
m_data
+ self->
m_strides
[
0
] * i +
self->
m_strides
[
1
] * j + self->
m_strides
[
2
] * k);
}
sub_t
subarray
(npy_intp i)
const
{
const
AVC
*self =
static_cast
<
const
AVC
*>(
this
);
return
sub_t
(self->
m_arr
,
self->
m_data
+ self->
m_strides
[
0
] * i,
self->
m_shape
+
1
,
self->
m_strides
+
1
);
}
};
//
When adding instantiations of array_view_accessors, remember to add entries
//
to zeros[] below.
}
static
npy_intp zeros[] = {
0
,
0
,
0
};
template
<
typename
T,
int
ND
>
class
array_view
:
public
detail
::array_view_accessors<array_view, T,
ND
>
{
friend
class
detail
::array_view_accessors<numpy::array_view, T,
ND
>;
private:
//
Copies of the array data
PyArrayObject *m_arr;
npy_intp *m_shape;
npy_intp *m_strides;
char
*m_data;
public:
typedef
T value_type;
enum
{
ndim =
ND
};
array_view
() : m_arr(
NULL
), m_data(
NULL
)
{
m_shape = zeros;
m_strides = zeros;
}
array_view
(PyObject *arr,
bool
contiguous =
false
) : m_arr(
NULL
), m_data(
NULL
)
{
if
(!
set
(arr, contiguous)) {
throw
mpl::exception
();
}
}
array_view
(
const
array_view &other) : m_arr(
NULL
), m_data(
NULL
)
{
m_arr = other.
m_arr
;
Py_XINCREF
(m_arr);
m_data = other.
m_data
;
m_shape = other.
m_shape
;
m_strides = other.
m_strides
;
}
array_view
(PyArrayObject *arr,
char
*data, npy_intp *shape, npy_intp *strides)
{
m_arr = arr;
Py_XINCREF
(arr);
m_data = data;
m_shape = shape;
m_strides = strides;
}
array_view
(PyArrayObject *arr)
{
m_arr = arr;
Py_XINCREF
(arr);
m_shape =
PyArray_DIMS
(m_arr);
m_strides =
PyArray_STRIDES
(m_arr);
m_data =
PyArray_BYTES
(m_arr);
}
array_view
(npy_intp shape[
ND
]) : m_arr(
NULL
), m_shape(
NULL
), m_strides(
NULL
), m_data(
NULL
)
{
PyObject *arr =
PyArray_SimpleNew
(
ND
, shape, type_num_of<T>::value);
if
(arr ==
NULL
) {
throw
mpl::exception
();
}
if
(!
set
(arr,
true
)) {
Py_DECREF
(arr);
throw
mpl::exception
();
}
Py_DECREF
(arr);
}
~array_view
()
{
Py_XDECREF
(m_arr);
}
array_view&
operator
=(
const
array_view &other)
{
if
(
this
!= &other)
{
Py_XDECREF
(m_arr);
m_arr = other.
m_arr
;
Py_XINCREF
(m_arr);
m_data = other.
m_data
;
m_shape = other.
m_shape
;
m_strides = other.
m_strides
;
}
return
*
this
;
}
bool
set
(PyObject *arr,
bool
contiguous =
false
)
{
PyArrayObject *tmp;
if
(arr ==
NULL
|| arr == Py_None) {
Py_XDECREF
(m_arr);
m_arr =
NULL
;
m_data =
NULL
;
m_shape = zeros;
m_strides = zeros;
}
else
{
if
(contiguous) {
tmp = (PyArrayObject *)
PyArray_ContiguousFromAny
(arr, type_num_of<T>::value,
0
,
ND
);
}
else
{
tmp = (PyArrayObject *)
PyArray_FromObject
(arr, type_num_of<T>::value,
0
,
ND
);
}
if
(tmp ==
NULL
) {
return
false
;
}
if
(
PyArray_NDIM
(tmp) ==
0
||
PyArray_DIM
(tmp,
0
) ==
0
) {
Py_XDECREF
(m_arr);
m_arr =
NULL
;
m_data =
NULL
;
m_shape = zeros;
m_strides = zeros;
if
(
PyArray_NDIM
(tmp) ==
0
&&
ND
==
0
) {
m_arr = tmp;
return
true
;
}
}
if
(
PyArray_NDIM
(tmp) !=
ND
) {
PyErr_Format
(PyExc_ValueError,
"
Expected %d-dimensional array, got %d
"
,
ND
,
PyArray_NDIM
(tmp));
Py_DECREF
(tmp);
return
false
;
}
/*
Copy some of the data to the view object for faster access
*/
Py_XDECREF
(m_arr);
m_arr = tmp;
m_shape =
PyArray_DIMS
(m_arr);
m_strides =
PyArray_STRIDES
(m_arr);
m_data =
PyArray_BYTES
(tmp);
}
return
true
;
}
npy_intp
shape
(
size_t
i)
const
{
if
(i >=
ND
) {
return
0
;
}
return
m_shape[i];
}
size_t
size
()
const
;
//
Do not use this for array_view<bool, ND>. See comment near top of file.
const
T *
data
()
const
{
return
(
const
T *)m_data;
}
//
Do not use this for array_view<bool, ND>. See comment near top of file.
T *
data
()
{
return
(T *)m_data;
}
//
Return a new reference.
PyObject *
pyobj
()
{
Py_XINCREF
(m_arr);
return
(PyObject *)m_arr;
}
//
Steal a reference.
PyObject *
pyobj_steal
()
{
return
(PyObject *)m_arr;
}
static
int
converter
(PyObject *obj,
void
*arrp)
{
array_view<T,
ND
> *arr = (array_view<T,
ND
> *)arrp;
if
(!arr->
set
(obj)) {
return
0
;
}
return
1
;
}
static
int
converter_contiguous
(PyObject *obj,
void
*arrp)
{
array_view<T,
ND
> *arr = (array_view<T,
ND
> *)arrp;
if
(!arr->
set
(obj,
true
)) {
return
0
;
}
return
1
;
}
};
/*
In most cases, code should use safe_first_shape(obj) instead of obj.shape(0), since
safe_first_shape(obj) == 0 when any dimension is 0.
*/
template
<
typename
T,
int
ND
>
size_t
safe_first_shape
(
const
array_view<T,
ND
> &a)
{
bool
empty = (
ND
==
0
);
for
(
size_t
i =
0
; i <
ND
; i++) {
if
(a.
shape
(i) ==
0
) {
empty =
true
;
}
}
if
(empty) {
return
0
;
}
else
{
return
(
size_t
)a.
shape
(
0
);
}
}
template
<
typename
T,
int
ND
>
size_t
array_view<T,
ND
>::size()
const
{
return
safe_first_shape<T,
ND
>(*
this
);
}
}
//
namespace numpy
#
endif
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