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# setup script for python-pninexus
from
__future__
import
print_function
import
sys
import
os
import
os
.
path
import
numpy
import
shutil
from
setuptools
import
setup
from
distutils
.
command
.
install
import
install
import
sysconfig
from
build_tools
import
(
CppExtensionFactory
,
ConanBuildInfoBuilder
,
BuildConfiguration
)
try
:
from
sphinx
.
setup_command
import
BuildDoc
except
ImportError
:
print
(
'WARNING: sphinx is not available, not building docs'
)
BuildDoc
=
None
name
=
"pninexus"
version
=
"3.6.0"
release
=
"3.6.0"
# documentation for release with one '.' is stored as v:latest
# release = "3.6"
if
release
.
count
(
"."
)
==
1
:
docs_release
=
'(latest)'
else
:
docs_release
=
release
def
read
(
fname
):
""" read the file
:param fname: readme file name
:type fname: :obj:`str`
"""
with
open
(
os
.
path
.
join
(
'.'
,
fname
),
encoding
=
'utf-8'
)
as
f
:
long_description
=
f
.
read
()
return
long_description
# -----------------------------------------------------------------------------
# set include directories, linker path and libraries
# we have two possibilities to configure the build:
# -> via pkg-config using locally installed libraries
# -> via Conan
# if a conanbuildinfo.txt file exists in the root directory of the package the
# conan variant will be used automatically.
# -----------------------------------------------------------------------------
h5cpp_extra_link_args
=
[]
nexus_extra_link_args
=
[]
if
os
.
path
.
exists
(
"conanbuildinfo.txt"
):
builder
=
ConanBuildInfoBuilder
()
nexus_config
=
builder
.
create
(
"conanbuildinfo.txt"
)
nexus_config
.
add_linker_argument
(
"-Wl,-rpath,'$ORIGIN'/../../libs"
)
print
(
"linking with libraries:"
)
for
lib
in
nexus_config
.
link_libraries
:
print
(
lib
)
else
:
nexus_config
=
BuildConfiguration
()
nexus_config
.
add_link_library
(
'pninexus'
)
nexus_config
.
add_link_library
(
'h5cpp'
)
nexus_config
.
add_link_library
(
"boost_python{major}{minor}"
.
format
(
major
=
sys
.
version_info
.
major
,
minor
=
sys
.
version_info
.
minor
))
hdf5_include_path
=
os
.
environ
.
get
(
'HDF5_INC_LOCAL_PATH'
)
if
not
hdf5_include_path
:
nexus_config
.
add_include_directory
(
'/usr/include/hdf5/serial'
)
elif
hdf5_include_path
!=
"__SYS__"
:
nexus_config
.
add_include_directory
(
hdf5_include_path
)
hdf5_hl_path
=
os
.
environ
.
get
(
'HDF5_HL_LOCAL_PATH'
)
if
hdf5_hl_path
:
# use when h5cpp compiled with --as-needed
nexus_config
.
add_link_library
(
'hdf5_hl'
)
if
hdf5_hl_path
!=
'__SYS__'
:
nexus_config
.
add_library_directory
(
# '/usr/lib/x86_64-linux-gnu/hdf5/serial/'
hdf5_hl_path
)
hdf5_path
=
os
.
environ
.
get
(
'HDF5_LOCAL_PATH'
)
if
hdf5_path
:
# use when h5cpp compiled with --as-needed
nexus_config
.
add_link_library
(
'hdf5'
)
if
hdf5_path
!=
'__SYS__'
:
nexus_config
.
add_library_directory
(
# '/usr/lib/x86_64-linux-gnu/hdf5/serial/'
hdf5_path
)
h5cpp_path
=
os
.
environ
.
get
(
'H5CPP_LOCAL_PATH'
)
if
h5cpp_path
:
# use when h5cpp locally installed
nexus_config
.
add_include_directory
(
"%s/include"
%
h5cpp_path
)
nexus_config
.
add_library_directory
(
"%s/lib"
%
h5cpp_path
)
nexus_config
.
add_linker_argument
(
"-Wl,-rpath,/%s/lib"
%
h5cpp_path
)
pninexus_path
=
os
.
environ
.
get
(
'PNINEXUS_LOCAL_PATH'
)
if
pninexus_path
:
# use when libpnineuxs locally installed
nexus_config
.
add_include_directory
(
"%s/include"
%
pninexus_path
)
nexus_config
.
add_library_directory
(
"%s/lib"
%
pninexus_path
)
nexus_config
.
add_linker_argument
(
"-Wl,-rpath,%s/lib"
%
pninexus_path
)
packages
=
[
'pninexus'
,
'pninexus.h5cpp'
,
'pninexus.h5cpp.attribute'
,
'pninexus.h5cpp.dataspace'
,
'pninexus.h5cpp.datatype'
,
'pninexus.h5cpp.file'
,
'pninexus.h5cpp.filter'
,
'pninexus.h5cpp.node'
,
'pninexus.h5cpp.property'
,
'pninexus.nexus'
]
package_data
=
{}
def
add_filters
(
filters
,
pkgs
,
pkgs_data
):
added
=
False
dst
=
"src/pninexus/filters"
filter_path
=
os
.
environ
.
get
(
'HDF5_PLUGIN_PATH'
)
for
flt
in
filters
:
if
os
.
path
.
exists
(
flt
):
if
'pninexus.filters'
not
in
pkgs_data
:
pkgs_data
[
'pninexus.filters'
]
=
[]
pkgs_data
[
'pninexus.filters'
].
append
(
os
.
path
.
split
(
flt
)[
-
1
])
shutil
.
copy
(
flt
,
dst
)
added
=
True
elif
filter_path
and
os
.
path
.
exists
(
os
.
path
.
join
(
filter_path
,
flt
)):
if
'pninexus.filters'
not
in
pkgs_data
:
pkgs_data
[
'pninexus.filters'
]
=
[]
pkgs_data
[
'pninexus.filters'
].
append
(
os
.
path
.
split
(
flt
)[
-
1
])
shutil
.
copy
(
os
.
path
.
join
(
filter_path
,
flt
),
dst
)
added
=
True
else
:
raise
Exception
(
"Filter %s cannot be found"
%
flt
)
print
(
"Copy %s to pninexus/filters"
%
flt
)
if
added
:
pkgs
.
append
(
'pninexus.filters'
)
return
added
pninexus_filters
=
os
.
environ
.
get
(
'PNINEXUS_FILTERS'
)
if
pninexus_filters
:
add_filters
(
pninexus_filters
.
split
(
','
),
packages
,
package_data
)
#
# adding include directories from numpy
#
nexus_config
.
add_include_directories
([
numpy
.
get_include
()])
# ----------------------------------------------------------------------------
# set compiler options
# ----------------------------------------------------------------------------
if
sys
.
platform
in
[
"win32"
,
"win64"
]:
arguments
=
[
'/std:c++17'
]
else
:
# old version
# arguments = ['-std=c++17', '-Wall', '-Wextra',
# '-fdiagnostics-show-option']
# lto does not work
# arguments = ['-std=c++17', '-Wall', '-Wextra',
# '-fdiagnostics-show-option', '-flto=auto', '-ffat-lto-objects']
# no-lto to be on the save side
arguments
=
[
'-std=c++17'
,
'-Wall'
,
'-Wextra'
,
'-fdiagnostics-show-option'
,
'-fno-lto'
]
nexus_config
.
add_compiler_arguments
(
arguments
)
# ----------------------------------------------------------------------------
# creating the extension factories
# ----------------------------------------------------------------------------
nexus_extension_factory
=
CppExtensionFactory
(
config
=
nexus_config
)
# -----------------------------------------------------------------------------
# setup for the h5cpp and nexus extensions
# -----------------------------------------------------------------------------
h5cpp_common_sources
=
[
'src/cpp/h5cpp/common/converters.cpp'
,
'src/cpp/h5cpp/numpy/dimensions.cpp'
,
'src/cpp/h5cpp/numpy/array_factory.cpp'
,
'src/cpp/h5cpp/numpy/array_adapter.cpp'
]
h5cpp_core_ext
=
nexus_extension_factory
.
create
(
module_name
=
"pninexus.h5cpp._h5cpp"
,
source_files
=
[
'src/cpp/h5cpp/_h5cpp.cpp'
,
'src/cpp/h5cpp/boost_filesystem_path_conversion.cpp'
,
'src/cpp/h5cpp/dimensions_conversion.cpp'
,
'src/cpp/h5cpp/errors.cpp'
])
h5cpp_attribute_ext
=
nexus_extension_factory
.
create
(
module_name
=
'pninexus.h5cpp._attribute'
,
source_files
=
[
'src/cpp/h5cpp/attribute/attribute.cpp'
]
+
h5cpp_common_sources
)
h5cpp_file_ext
=
nexus_extension_factory
.
create
(
module_name
=
'pninexus.h5cpp._file'
,
source_files
=
[
'src/cpp/h5cpp/file/file.cpp'
]
+
h5cpp_common_sources
)
h5cpp_dataspace_ext
=
nexus_extension_factory
.
create
(
module_name
=
'pninexus.h5cpp._dataspace'
,
source_files
=
[
'src/cpp/h5cpp/dataspace/dataspace.cpp'
,
'src/cpp/h5cpp/dataspace/selections.cpp'
])
h5cpp_datatype_ext
=
nexus_extension_factory
.
create
(
module_name
=
'pninexus.h5cpp._datatype'
,
source_files
=
[
'src/cpp/h5cpp/datatype/datatype.cpp'
])
h5cpp_filter_ext
=
nexus_extension_factory
.
create
(
module_name
=
'pninexus.h5cpp._filter'
,
source_files
=
[
'src/cpp/h5cpp/filter/filter.cpp'
])
h5cpp_property_ext
=
nexus_extension_factory
.
create
(
module_name
=
'pninexus.h5cpp._property'
,
source_files
=
[
'src/cpp/h5cpp/property/property.cpp'
,
'src/cpp/h5cpp/property/enumeration_wrappers.cpp'
,
'src/cpp/h5cpp/property/class_wrappers.cpp'
,
'src/cpp/h5cpp/property/copy_flag_wrapper.cpp'
,
'src/cpp/h5cpp/property/chunk_cache_parameters.cpp'
,
'src/cpp/h5cpp/property/creation_order.cpp'
])
h5cpp_node_ext
=
nexus_extension_factory
.
create
(
module_name
=
'pninexus.h5cpp._node'
,
source_files
=
[
'src/cpp/h5cpp/node/nodes.cpp'
,
'src/cpp/h5cpp/node/dataset.cpp'
,
'src/cpp/h5cpp/node/functions.cpp'
]
+
h5cpp_common_sources
)
nexus_extension
=
nexus_extension_factory
.
create
(
module_name
=
'pninexus.nexus._nexus'
,
source_files
=
[
'src/cpp/nexus/nexus.cpp'
,
'src/cpp/nexus/factories.cpp'
,
'src/cpp/nexus/predicates.cpp'
,
'src/cpp/nexus/list_converters.cpp'
,
'src/cpp/nexus/path.cpp'
,
'src/cpp/nexus/element_dict_converter.cpp'
])
# ----------------------------------------------------------------------------
# customized version of the `install` command. The original version shipped
# with distutils does not install header files even if they are mentioned
# in the project setup.
#
# We thus call `install_headers` manually.
# ----------------------------------------------------------------------------
class
pni_install
(
install
):
def
run
(
self
):
install
.
run
(
self
)
# ----------------------------------------------------------------------------
# setup for the pnicore package
# ----------------------------------------------------------------------------
setup
(
name
=
"pninexus"
,
author
=
"Eugen Wintersberger"
,
author_email
=
"eugen.wintersberger@desy.de"
,
description
=
"Python wrapper for the H5CPP and PNI libraries"
,
long_description
=
read
(
'README.rst'
),
maintainer
=
"Eugen Wintersberger, Jan Kotanski"
,
maintainer_email
=
"jan.kotanski@desy.de"
,
license
=
"GPLv2"
,
version
=
release
,
install_requires
=
[
"numpy"
],
ext_modules
=
[
h5cpp_core_ext
,
h5cpp_attribute_ext
,
h5cpp_file_ext
,
h5cpp_dataspace_ext
,
h5cpp_datatype_ext
,
h5cpp_property_ext
,
h5cpp_filter_ext
,
h5cpp_node_ext
,
nexus_extension
,
],
package_dir
=
{
''
:
'src'
},
packages
=
packages
,
package_data
=
package_data
,
url
=
"https://github.com/pni-libraries/python-pninexus"
,
classifiers
=
[
'Development Status :: 5 - Production/Stable'
,
'Intended Audience :: Science/Research'
,
'Topic :: Scientific/Engineering :: Physics'
,
'Topic :: Software Development :: Libraries :: Python Modules'
,
# 'License :: OSI Approved :: GNU General Public License v2 (GPLv2)',
'Programming Language :: Python :: 2.7'
,
'Programming Language :: Python :: 3.7'
,
'Programming Language :: Python :: 3.8'
,
'Programming Language :: Python :: 3.9'
,
'Programming Language :: Python :: 3.10'
,
'Programming Language :: Python :: 3.11'
,
'Programming Language :: Python :: 3.12'
,
'Programming Language :: Python :: 3.13'
,
'Programming Language :: Python :: 3.14'
,
],
# test_suite="test",
# test_loader="unittest:TestLoader",
cmdclass
=
{
"install"
:
pni_install
,
'build_sphinx'
:
BuildDoc
,
},
keywords
=
'h5cpp hdf5 python photon science detector'
,
command_options
=
{
'build_sphinx'
: {
'project'
: (
'setup.py'
,
name
),
'version'
: (
'setup.py'
,
version
),
'release'
: (
'setup.py'
,
docs_release
)
}
}
)
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