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#
include
"
cal_ldos.h
"
#
include
"
cal_dos.h
"
#
include
"
cube_io.h
"
#
include
"
source_estate/module_dm/cal_dm_psi.h
"
#
include
"
source_lcao/module_gint/temp_gint/gint_interface.h
"
#
include
<
type_traits
>
namespace
ModuleIO
{
#
ifdef
__LCAO
template
<
typename
T>
void
Cal_ldos<T>::cal_ldos_lcao(
const
elecstate::ElecStateLCAO<T>* pelec,
const
psi::Psi<T>& psi,
const
Parallel_Grid& pgrid,
const
UnitCell& ucell)
{
for
(
int
ie =
0
; ie <
PARAM
.
inp
.
stm_bias
[
2
]; ie++)
{
//
energy range for ldos (efermi as reference)
const
double
en =
PARAM
.
inp
.
stm_bias
[
0
] + ie *
PARAM
.
inp
.
stm_bias
[
1
];
const
double
emin = en <
0
? en :
0
;
const
double
emax = en >
0
? en :
0
;
//
calculate weight (for bands not in the range, weight is zero)
ModuleBase::matrix
weight
(pelec->
ekb
.
nr
, pelec->
ekb
.
nc
);
for
(
int
ik =
0
; ik < pelec->
ekb
.
nr
; ++ik)
{
const
double
efermi = pelec->
eferm
.
get_efval
(pelec->
klist
->
isk
[ik]);
for
(
int
ib =
0
; ib < pelec->
ekb
.
nc
; ib++)
{
const
double
eigenval = (pelec->
ekb
(ik, ib) - efermi) * ModuleBase::Ry_to_eV;
if
(eigenval >= emin && eigenval <= emax)
{
weight
(ik, ib) = en >
0
? pelec->
klist
->
wk
[ik] - pelec->
wg
(ik, ib) : pelec->
wg
(ik, ib);
}
}
}
//
calculate dm-like for ldos
const
int
nspin_dm =
PARAM
.
inp
.
nspin
==
2
?
2
:
1
;
elecstate::DensityMatrix<T,
double
>
dm_ldos
(pelec->
DM
->
get_paraV_pointer
(),
nspin_dm,
pelec->
klist
->
kvec_d
,
pelec->
klist
->
get_nks
() / nspin_dm);
elecstate::cal_dm_psi
(pelec->
DM
->
get_paraV_pointer
(), weight, psi, dm_ldos);
dm_ldos.
init_DMR
(*(pelec->
DM
->
get_DMR_pointer
(
1
)));
dm_ldos.
cal_DMR
();
//
allocate ldos space
std::vector<
double
>
ldos_space
(
PARAM
.
inp
.
nspin
* pelec->
charge
->
nrxx
);
double
** ldos =
new
double
*[
PARAM
.
inp
.
nspin
];
for
(
int
is =
0
; is <
PARAM
.
inp
.
nspin
; ++is)
{
ldos[is] = &ldos_space[is * pelec->
charge
->
nrxx
];
}
//
calculate ldos
#
ifdef
__OLD_GINT
ModuleBase::WARNING_QUIT
(
"
Cal_ldos::dm2ldos
"
,
"
do not support old grid integral, please recompile with __NEW_GINT
"
);
#
else
ModuleGint::cal_gint_rho
(dm_ldos.
get_DMR_vector
(),
PARAM
.
inp
.
nspin
, ldos);
#
endif
//
I'm not sure whether ldos should be output for each spin or not
//
ldos[0] += ldos[1] for nspin_dm == 2
if
(nspin_dm ==
2
)
{
BlasConnector::axpy
(pelec->
charge
->
nrxx
,
1.0
, ldos[
1
],
1
, ldos[
0
],
1
);
}
//
write ldos to cube file
std::stringstream fn;
fn <<
PARAM
.
globalv
.
global_out_dir
<<
"
LDOS_
"
<< en <<
"
eV
"
<<
"
.cube
"
;
const
int
precision =
PARAM
.
inp
.
out_ldos
[
1
];
ModuleIO::write_vdata_palgrid
(pgrid,
ldos_space.
data
(),
0
,
PARAM
.
inp
.
nspin
,
0
,
fn.
str
(),
0
,
&ucell,
precision,
0
);
//
free memory
delete[]
ldos;
}
}
#
endif
template
class
Cal_ldos
<
double
>;
//
Gamma_only case
template
class
Cal_ldos
<std::
complex
<
double
>>;
//
multi-k case
//
pw case
void
cal_ldos_pw
(
const
elecstate::ElecStatePW<std::
complex
<
double
>>* pelec,
const
psi::Psi<std::
complex
<
double
>>& psi,
const
Parallel_Grid& pgrid,
const
UnitCell& ucell)
{
if
(
PARAM
.
inp
.
out_ldos
[
0
] ==
1
||
PARAM
.
inp
.
out_ldos
[
0
] ==
3
)
{
ModuleIO::stm_mode_pw
(pelec, psi, pgrid, ucell);
}
if
(
PARAM
.
inp
.
out_ldos
[
0
] ==
2
||
PARAM
.
inp
.
out_ldos
[
0
] ==
3
)
{
ModuleIO::ldos_mode_pw
(pelec, psi, pgrid, ucell);
}
}
void
stm_mode_pw
(
const
elecstate::ElecStatePW<std::
complex
<
double
>>* pelec,
const
psi::Psi<std::
complex
<
double
>>& psi,
const
Parallel_Grid& pgrid,
const
UnitCell& ucell)
{
for
(
int
ie =
0
; ie <
PARAM
.
inp
.
stm_bias
[
2
]; ie++)
{
//
energy range for ldos (efermi as reference)
const
double
en =
PARAM
.
inp
.
stm_bias
[
0
] + ie *
PARAM
.
inp
.
stm_bias
[
1
];
const
double
emin = en <
0
? en :
0
;
const
double
emax = en >
0
? en :
0
;
std::vector<
double
>
ldos
(pelec->
charge
->
nrxx
);
std::vector<std::
complex
<
double
>>
wfcr
(pelec->
basis
->
nrxx
);
for
(
int
ik =
0
; ik < pelec->
klist
->
get_nks
(); ++ik)
{
psi.
fix_k
(ik);
const
double
efermi = pelec->
eferm
.
get_efval
(pelec->
klist
->
isk
[ik]);
const
int
nbands = psi.
get_nbands
();
for
(
int
ib =
0
; ib < nbands; ib++)
{
pelec->
basis
->
recip2real
(&
psi
(ib,
0
), wfcr.
data
(), ik);
const
double
eigenval = (pelec->
ekb
(ik, ib) - efermi) * ModuleBase::Ry_to_eV;
double
weight = en >
0
? pelec->
klist
->
wk
[ik] - pelec->
wg
(ik, ib) : pelec->
wg
(ik, ib);
weight /= ucell.
omega
;
if
(eigenval >= emin && eigenval <= emax)
{
for
(
int
ir =
0
; ir < pelec->
basis
->
nrxx
; ir++)
{
ldos[ir] += weight *
norm
(wfcr[ir]);
}
}
}
}
std::stringstream fn;
fn <<
PARAM
.
globalv
.
global_out_dir
<<
"
LDOS_
"
<< en <<
"
eV
"
<<
"
.cube
"
;
const
int
precision =
PARAM
.
inp
.
out_ldos
[
1
];
ModuleIO::write_vdata_palgrid
(pgrid, ldos.
data
(),
0
,
PARAM
.
inp
.
nspin
,
0
, fn.
str
(),
0
, &ucell, precision,
0
);
}
}
void
ldos_mode_pw
(
const
elecstate::ElecStatePW<std::
complex
<
double
>>* pelec,
const
psi::Psi<std::
complex
<
double
>>& psi,
const
Parallel_Grid& pgrid,
const
UnitCell& ucell)
{
double
emax =
0.0
;
double
emin =
0.0
;
prepare_dos
(GlobalV::ofs_running,
pelec->
eferm
,
pelec->
ekb
,
pelec->
klist
->
get_nks
(),
PARAM
.
inp
.
nbands
,
PARAM
.
inp
.
dos_edelta_ev
,
PARAM
.
inp
.
dos_scale
,
emax,
emin);
const
int
ndata =
static_cast
<
int
>((emax - emin) /
PARAM
.
inp
.
dos_edelta_ev
) +
1
;
const
double
sigma =
sqrt
(
2.0
) *
PARAM
.
inp
.
dos_sigma
;
const
double
sigma2 = sigma * sigma;
const
double
sigma_PI =
sqrt
(ModuleBase::
PI
) * sigma;
std::vector<
double
> start = {
PARAM
.
inp
.
ldos_line
[
0
],
PARAM
.
inp
.
ldos_line
[
1
],
PARAM
.
inp
.
ldos_line
[
2
]};
std::vector<
double
> end = {
PARAM
.
inp
.
ldos_line
[
3
],
PARAM
.
inp
.
ldos_line
[
4
],
PARAM
.
inp
.
ldos_line
[
5
]};
const
int
npoints =
PARAM
.
inp
.
ldos_line
[
6
];
//
calculate grid points
std::vector<std::vector<
int
>>
points
(npoints, std::vector<
int
>(
3
,
0
));
std::vector<std::vector<
double
>>
shifts
(npoints, std::vector<
double
>(
3
,
0
));
get_grid_points
(start, end, npoints, pgrid.
nx
, pgrid.
ny
, pgrid.
nz
, points, shifts);
std::vector<std::vector<
double
>>
ldos
(npoints, std::vector<
double
>(ndata,
0
));
//
calculate ldos
std::vector<
double
>
tmp
(pelec->
charge
->
nrxx
);
std::vector<std::
complex
<
double
>>
wfcr
(pelec->
basis
->
nrxx
);
for
(
int
ik =
0
; ik < pelec->
klist
->
get_nks
(); ++ik)
{
psi.
fix_k
(ik);
const
double
efermi = pelec->
eferm
.
get_efval
(pelec->
klist
->
isk
[ik]);
const
int
nbands = psi.
get_nbands
();
for
(
int
ib =
0
; ib < nbands; ib++)
{
pelec->
basis
->
recip2real
(&
psi
(ib,
0
), wfcr.
data
(), ik);
const
double
weight = pelec->
klist
->
wk
[ik] / ucell.
omega
;
for
(
int
ir =
0
; ir < pelec->
basis
->
nrxx
; ir++)
{
tmp[ir] += weight *
norm
(wfcr[ir]);
}
std::vector<
double
>
results
(npoints,
0
);
trilinear_interpolate
(points, shifts, pgrid, tmp, results);
const
double
eigenval = pelec->
ekb
(ik, ib) * ModuleBase::Ry_to_eV;
for
(
int
ie =
0
; ie < ndata; ++ie)
{
const
double
en = emin + ie *
PARAM
.
inp
.
dos_edelta_ev
;
const
double
de = en - eigenval;
const
double
de2 = de * de;
const
double
gauss =
exp
(-de2 / sigma2) / sigma_PI;
for
(
int
ip =
0
; ip < npoints; ++ip)
{
ldos[ip][ie] += results[ip] * gauss;
}
}
}
}
std::ofstream ofs_ldos;
std::stringstream fn;
fn <<
PARAM
.
globalv
.
global_out_dir
<<
"
LDOS.txt
"
;
if
(GlobalV::
MY_RANK
==
0
)
{
ofs_ldos.
open
(fn.
str
().
c_str
());
for
(
int
ip =
0
; ip < npoints; ++ip)
{
for
(
int
ie =
0
; ie < ndata; ++ie)
{
ofs_ldos << ldos[ip][ie] <<
"
"
;
}
ofs_ldos << std::endl;
}
ofs_ldos.
close
();
}
}
void
get_grid_points
(
const
std::vector<
double
>& start,
const
std::vector<
double
>& end,
const
int
& npoints,
const
int
& nx,
const
int
& ny,
const
int
& nz,
std::vector<std::vector<
int
>>& points,
std::vector<std::vector<
double
>>& shifts)
{
std::vector<
int
> ndim = {nx, ny, nz};
auto
grid_points = [](
const
std::vector<
double
>& coor,
const
std::vector<
int
>& ndim,
std::vector<
int
>& points,
std::vector<
double
>& shift) {
for
(
int
i =
0
; i <
3
; i++)
{
shift[i] = coor[i] * ndim[i];
while
(shift[i] >= ndim[i])
{
shift[i] -= ndim[i];
}
while
(shift[i] <
0
)
{
shift[i] += ndim[i];
}
points[i] =
static_cast
<
int
>(shift[i]);
shift[i] -= points[i];
}
};
if
(npoints ==
1
)
{
grid_points
(start, ndim, points[
0
], shifts[
0
]);
}
else
{
std::vector<
double
> delta = {end[
0
] - start[
0
], end[
1
] - start[
1
], end[
2
] - start[
2
]};
for
(
int
i =
0
; i < npoints; i++)
{
const
double
ratio =
static_cast
<
double
>(i) / (npoints -
1
);
std::vector<
double
> current = {
0
,
0
,
0
};
for
(
int
j =
0
; j <
3
; j++)
{
current[j] = start[j] + ratio * delta[j];
}
grid_points
(current, ndim, points[i], shifts[i]);
}
}
}
void
trilinear_interpolate
(
const
std::vector<std::vector<
int
>>& points,
const
std::vector<std::vector<
double
>>& shifts,
const
Parallel_Grid& pgrid,
const
std::vector<
double
>& data,
std::vector<
double
>& results)
{
const
int
nx = pgrid.
nx
;
const
int
ny = pgrid.
ny
;
const
int
nz = pgrid.
nz
;
const
int
nyz = ny * nz;
const
int
nxyz = nx * ny * nz;
//
reduce
std::vector<
double
>
data_full
(nxyz);
#
ifdef
__MPI
if
(GlobalV::
MY_POOL
==
0
&& GlobalV::
MY_BNDGROUP
==
0
)
{
pgrid.
reduce
(data_full.
data
(), data.
data
(),
false
);
}
MPI_Barrier
(
MPI_COMM_WORLD
);
#
else
std::memcpy
(data_full.
data
(), data.
data
(), nxyz *
sizeof
(
double
));
#
endif
auto
grid_points = [&data_full, &nyz, &nz](
const
int
& ix,
const
int
& iy,
const
int
& iz) {
return
data_full[ix * nyz + iy * nz + iz];
};
//
trilinear interpolation
const
int
npoints = points.
size
();
results.
resize
(npoints,
0.0
);
if
(GlobalV::
MY_RANK
==
0
)
{
for
(
int
l =
0
; l < npoints; ++l)
{
for
(
int
i =
0
; i <
2
; ++i)
{
double
weight = (i * shifts[l][
0
] + (
1
- i) * (
1
- shifts[l][
0
]));
for
(
int
j =
0
; j <
2
; ++j)
{
weight *= (j * shifts[l][
1
] + (
1
- j) * (
1
- shifts[l][
1
]));
for
(
int
k =
0
; k <
2
; ++k)
{
weight *= (k * shifts[l][
2
] + (
1
- k) * (
1
- shifts[l][
2
]));
const
int
ix = points[l][
0
] + i;
const
int
iy = points[l][
1
] + j;
const
int
iz = points[l][
2
] + k;
results[l] += weight *
grid_points
(ix, iy, iz);
}
}
}
}
}
#
ifdef
__MPI
MPI_Bcast
(results.
data
(), npoints,
MPI_DOUBLE
,
0
,
MPI_COMM_WORLD
);
#
endif
}
}
//
namespace ModuleIO
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