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# Copyright (c) 2020 Leiden University Medical Center
# Copyright (c) 2001, 2002, 2003, 2004, 2005, 2006, 2007, 2008, 2009, 2010,
# 2011, 2012, 2013, 2014, 2015, 2016, 2017, 2018, 2019, 2020, 2021, 2022
# Python Software Foundation; All Rights Reserved
# This file is part of python-isal which is distributed under the
# PYTHON SOFTWARE FOUNDATION LICENSE VERSION 2.
import
functools
import
os
import
platform
import
shutil
import
subprocess
import
sys
import
tempfile
from
pathlib
import
Path
from
setuptools
import
Extension
,
setup
from
setuptools
.
command
.
build_ext
import
build_ext
ISA_L_SOURCE
=
os
.
path
.
join
(
"src"
,
"isal"
,
"isa-l"
)
SYSTEM_IS_BSD
=
(
sys
.
platform
.
startswith
(
"freebsd"
)
or
sys
.
platform
.
startswith
(
"netbsd"
))
SYSTEM_IS_UNIX
=
(
sys
.
platform
.
startswith
(
"linux"
)
or
sys
.
platform
.
startswith
(
"darwin"
)
or
sys
.
platform
.
startswith
(
"gnu"
)
or
SYSTEM_IS_BSD
)
SYSTEM_IS_WINDOWS
=
sys
.
platform
.
startswith
(
"win"
)
# Since pip builds in a temp directory by default, setting a fixed file in
# /tmp works during the entire session.
DEFAULT_CACHE_FILE
=
Path
(
tempfile
.
gettempdir
()
).
absolute
()
/
".isal_build_cache"
BUILD_CACHE
=
os
.
environ
.
get
(
"PYTHON_ISAL_BUILD_CACHE"
)
BUILD_CACHE_FILE
=
Path
(
os
.
environ
.
get
(
"PYTHON_ISAL_BUILD_CACHE_FILE"
,
DEFAULT_CACHE_FILE
))
EXTENSIONS
=
[
Extension
(
"isal.isal_zlib"
, [
"src/isal/isal_zlibmodule.c"
]),
Extension
(
"isal.igzip_lib"
, [
"src/isal/igzip_libmodule.c"
]),
Extension
(
"isal._isal"
, [
"src/isal/_isalmodule.c"
]),
]
class
BuildIsalExt
(
build_ext
):
def
build_extension
(
self
,
ext
):
# Add option to link dynamically for packaging systems such as conda.
# Always link dynamically on readthedocs to simplify install.
if
(
os
.
getenv
(
"PYTHON_ISAL_LINK_DYNAMIC"
)
is
not
None
or
os
.
environ
.
get
(
"READTHEDOCS"
)
is
not
None
):
# Check for isa-l include directories. This is useful when
# installing in a conda environment.
possible_prefixes
=
[
sys
.
exec_prefix
,
sys
.
base_exec_prefix
]
for
prefix
in
possible_prefixes
:
if
Path
(
prefix
,
"include"
,
"isa-l"
).
exists
():
ext
.
include_dirs
=
[
os
.
path
.
join
(
prefix
,
"include"
)]
ext
.
library_dirs
=
[
os
.
path
.
join
(
prefix
,
"lib"
)]
break
# Only one include directory is needed.
# On windows include is in Library apparently
elif
Path
(
prefix
,
"Library"
,
"include"
,
"isa-l"
).
exists
():
ext
.
include_dirs
=
[
os
.
path
.
join
(
prefix
,
"Library"
,
"include"
)]
ext
.
library_dirs
=
[
os
.
path
.
join
(
prefix
,
"Library"
,
"lib"
)]
break
if
SYSTEM_IS_UNIX
:
ext
.
libraries
=
[
"isal"
]
# libisal.so*
elif
SYSTEM_IS_WINDOWS
:
ext
.
libraries
=
[
"isa-l"
]
# isa-l.dll
else
:
raise
NotImplementedError
(
f"Unsupported platform:
{
sys
.
platform
}
"
)
else
:
isa_l_build_dir
=
build_isa_l
()
if
SYSTEM_IS_UNIX
:
ext
.
extra_objects
=
[
os
.
path
.
join
(
isa_l_build_dir
,
"bin"
,
"isa-l.a"
)]
elif
SYSTEM_IS_WINDOWS
:
ext
.
extra_objects
=
[
os
.
path
.
join
(
isa_l_build_dir
,
"isa-l_static.lib"
)]
else
:
raise
NotImplementedError
(
f"Unsupported platform:
{
sys
.
platform
}
"
)
ext
.
include_dirs
=
[
isa_l_build_dir
]
super
().
build_extension
(
ext
)
# Use a cache to prevent isa-l from being build twice. According to the
# functools docs lru_cache with maxsize None is faster. The shortcut called
# 'cache' is only available from python 3.9 onwards.
# see: https://docs.python.org/3/library/functools.html#functools.cache
@
functools
.
lru_cache
(
maxsize
=
None
)
def
build_isa_l
():
# Check for cache
if
BUILD_CACHE
:
if
BUILD_CACHE_FILE
.
exists
():
cache_path
=
Path
(
BUILD_CACHE_FILE
.
read_text
())
if
(
cache_path
/
"isa-l.h"
).
exists
():
return
str
(
cache_path
)
# Creating temporary directories
build_dir
=
tempfile
.
mktemp
()
shutil
.
copytree
(
ISA_L_SOURCE
,
build_dir
)
# Build environment is a copy of OS environment to allow user to influence
# it.
build_env
=
os
.
environ
.
copy
()
if
SYSTEM_IS_UNIX
:
build_env
[
"CFLAGS"
]
=
build_env
.
get
(
"CFLAGS"
,
""
)
+
" -fPIC"
if
hasattr
(
os
,
"sched_getaffinity"
):
cpu_count
=
len
(
os
.
sched_getaffinity
(
0
))
else
:
# sched_getaffinity not available on all platforms
cpu_count
=
os
.
cpu_count
()
or
1
# os.cpu_count() can return None
run_args
=
dict
(
cwd
=
build_dir
,
env
=
build_env
)
if
SYSTEM_IS_UNIX
:
if
platform
.
machine
()
==
"aarch64"
:
cflags_param
=
"CFLAGS_aarch64"
else
:
cflags_param
=
"CFLAGS_"
make_cmd
=
"make"
if
SYSTEM_IS_BSD
:
make_cmd
=
"gmake"
subprocess
.
run
([
make_cmd
,
"-j"
,
str
(
cpu_count
),
"-f"
,
"Makefile.unx"
,
"isa-l.h"
,
"bin/isa-l.a"
,
f"
{
cflags_param
}
=
{
build_env
.
get
(
'CFLAGS'
,
''
)
}
"
],
**
run_args
)
elif
SYSTEM_IS_WINDOWS
:
subprocess
.
run
([
"nmake"
,
"/f"
,
"Makefile.nmake"
],
**
run_args
)
else
:
raise
NotImplementedError
(
f"Unsupported platform:
{
sys
.
platform
}
"
)
shutil
.
copytree
(
os
.
path
.
join
(
build_dir
,
"include"
),
os
.
path
.
join
(
build_dir
,
"isa-l"
))
if
BUILD_CACHE
:
BUILD_CACHE_FILE
.
write_text
(
build_dir
)
return
build_dir
setup
(
cmdclass
=
{
"build_ext"
:
BuildIsalExt
},
ext_modules
=
EXTENSIONS
)
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