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#
To use:
#
$ conda env create -f environment.yml
#
$ conda activate graphblas-dev
#
#
Or use mamba instead of conda. Creating the environment may take several minutes.
#
#
pre-commit should be set up once after the repo is cloned (see .pre-commit-config.yaml).
#
In the `graphblas-dev` environment, run:
#
$ pre-commit install
#
#
It is okay to comment out sections below that you don't need such as viz or building docs.
name
:
graphblas-dev
channels
:
-
conda-forge
-
nodefaults
#
Only install packages from conda-forge for faster solving
dependencies
:
-
python
-
donfig
-
numba
-
python-suitesparse-graphblas
-
pyyaml
#
For repr
-
pandas
#
For I/O
-
awkward
-
networkx
-
scipy
-
sparse
#
For viz
-
datashader
-
hvplot
-
matplotlib
#
For linting
-
pre-commit
#
For testing
-
packaging
-
pytest-cov
-
tomli
#
For debugging
-
icecream
-
ipykernel
-
ipython
#
For type annotations
-
mypy
#
For building docs
-
nbsphinx
-
numpydoc
-
pydata-sphinx-theme>=0.15
-
sphinx>=7
-
sphinx-design
#
For building logo
-
drawsvg
-
cairosvg
#
EXTRA (optional; uncomment as desired)
#
- autoflake
#
- black
#
- black-jupyter
#
- codespell
#
- cython
#
- cytoolz
#
- distributed
#
- flake8
#
- flake8-bugbear
#
- flake8-comprehensions
#
- flake8-print
#
- flake8-quotes
#
- flake8-simplify
#
- gcc
#
- gh
#
- git
#
- graph-tool
#
- xorg-libxcursor # for graph-tool
#
- grayskull
#
- h5py
#
- hiveplot
#
- igraph
#
- ipycytoscape
#
- isort
#
- jupyter
#
- jupyterlab
#
- line_profiler
#
- lxml
#
- make
#
- memory_profiler
#
- nbqa
#
- netcdf4
#
- networkit
#
- nxviz
#
- pycodestyle
#
- pydot
#
- pygraphviz
#
- pylint
#
- pytest-runner
#
- pytest-xdist
#
- python-graphviz
#
- python-igraph
#
- python-louvain
#
- pyupgrade
#
- rich
#
- ruff
#
- scalene
#
- scikit-network
#
- setuptools-git-versioning
#
- snakeviz
#
- sphinx-lint
#
- sympy
#
- tuna
#
- twine
#
- vim
#
- zarr
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