xtensor-python/include/xtensor-python/pytensor.hpp at master · serge-sans-paille/xtensor-python · GitHub

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/***************************************************************************

* *

* Distributed under the terms of the BSD 3-Clause License. *

* *

* The full license is in the file LICENSE, distributed with this software. *

****************************************************************************/

#ifndef PY_TENSOR_HPP

#define PY_TENSOR_HPP

#include <algorithm>

#include <array>

#include <cstddef>

#include "xtensor/xbuffer_adaptor.hpp"

#include "xtensor/xiterator.hpp"

#include "xtensor/xsemantic.hpp"

#include "xtensor/xutils.hpp"

#include "pycontainer.hpp"

#include "pystrides_adaptor.hpp"

#include "xtensor_type_caster_base.hpp"

namespace xt

{

template <class T, std::size_t N, layout_type L = layout_type::dynamic>

class pytensor;

}

namespace pybind11

{

namespace detail

{

#ifdef PYBIND11_DESCR // The macro is removed from pybind11 since 2.3

template <class T, std::size_t N, xt::layout_type L>

struct handle_type_name<xt::pytensor<T, N, L>>

{

static PYBIND11_DESCR name()

{

return _("numpy.ndarray[") + npy_format_descriptor<T>::name() + _("]");

}

};

#endif

template <class T, std::size_t N, xt::layout_type L>

struct pyobject_caster<xt::pytensor<T, N, L>>

{

using type = xt::pytensor<T, N, L>;

bool load(handle src, bool convert)

{

if (!convert)

{

if (!xt::detail::check_array<T>(src))

{

return false;

}

value = type::ensure(src);

return static_cast<bool>(value);

}

static handle cast(const handle& src, return_value_policy, handle)

{

return src.inc_ref();

}

#ifdef PYBIND11_DESCR // The macro is removed from pybind11 since 2.3

PYBIND11_TYPE_CASTER(type, handle_type_name<type>::name());

#else

PYBIND11_TYPE_CASTER(type, _("numpy.ndarray[") + npy_format_descriptor<T>::name + _("]"));

#endif

};

// Type caster for casting ndarray to xexpression<pytensor>

template <class T, std::size_t N, xt::layout_type L>

struct type_caster<xt::xexpression<xt::pytensor<T, N, L>>> : pyobject_caster<xt::pytensor<T, N, L>>

{

using Type = xt::xexpression<xt::pytensor<T, N, L>>;

operator Type&()

{

return this->value;

}

operator const Type&()

{

return this->value;

}

};

// Type caster for casting xt::xtensor to ndarray

template <class T, std::size_t N, xt::layout_type L>

struct type_caster<xt::xtensor<T, N, L>> : xtensor_type_caster_base<xt::xtensor<T, N, L>>

{

};

}

namespace xt

{

template <class T, std::size_t N, layout_type L>

struct xiterable_inner_types<pytensor<T, N, L>>

: xcontainer_iterable_types<pytensor<T, N, L>>

{

};

template <class T, std::size_t N, layout_type L>

struct xcontainer_inner_types<pytensor<T, N, L>>

{

using storage_type = xbuffer_adaptor<T*>;

using reference = typename storage_type::reference;

using const_reference = typename storage_type::const_reference;

using size_type = typename storage_type::size_type;

using shape_type = std::array<npy_intp, N>;

using strides_type = shape_type;

using backstrides_type = shape_type;

using inner_shape_type = shape_type;

using inner_strides_type = strides_type;

using inner_backstrides_type = backstrides_type;

using temporary_type = pytensor<T, N, L>;

static constexpr layout_type layout = L;

};

/**

* @class pytensor

* @brief Multidimensional container providing the xtensor container semantics wrapping a numpy array.

* pytensor is similar to the xtensor container in that it has a static dimensionality.

* Unlike the pyarray container, pytensor cannot be reshaped with a different number of dimensions

* and reshapes are not reflected on the Python side. However, pytensor has benefits compared to pyarray

* in terms of performances. pytensor shapes are stack-allocated which makes iteration upon pytensor

* faster than with pyarray.

* @tparam T The type of the element stored in the pyarray.

* @sa pyarray

template <class T, std::size_t N, layout_type L>

class pytensor : public pycontainer<pytensor<T, N, L>>,

public xcontainer_semantic<pytensor<T, N, L>>

{

public:

using self_type = pytensor<T, N, L>;

using semantic_base = xcontainer_semantic<self_type>;

using base_type = pycontainer<self_type>;

using storage_type = typename base_type::storage_type;

using value_type = typename base_type::value_type;

using reference = typename base_type::reference;

using const_reference = typename base_type::const_reference;

using pointer = typename base_type::pointer;

using size_type = typename base_type::size_type;

using shape_type = typename base_type::shape_type;

using strides_type = typename base_type::strides_type;

using backstrides_type = typename base_type::backstrides_type;

using inner_shape_type = typename base_type::inner_shape_type;

using inner_strides_type = typename base_type::inner_strides_type;

using inner_backstrides_type = typename base_type::inner_backstrides_type;

pytensor();

pytensor(nested_initializer_list_t<T, N> t);

pytensor(pybind11::handle h, pybind11::object::borrowed_t);

pytensor(pybind11::handle h, pybind11::object::stolen_t);

pytensor(const pybind11::object& o);

explicit pytensor(const shape_type& shape, layout_type l = layout_type::row_major);

explicit pytensor(const shape_type& shape, const_reference value, layout_type l = layout_type::row_major);

explicit pytensor(const shape_type& shape, const strides_type& strides, const_reference value);

explicit pytensor(const shape_type& shape, const strides_type& strides);

template <class S = shape_type>

static pytensor from_shape(S&& shape);

pytensor(const self_type& rhs);

self_type& operator=(const self_type& rhs);

pytensor(self_type&&) = default;

self_type& operator=(self_type&& e) = default;

template <class E>

pytensor(const xexpression<E>& e);

template <class E>

self_type& operator=(const xexpression<E>& e);

using base_type::begin;

using base_type::end;

static self_type ensure(pybind11::handle h);

static bool check_(pybind11::handle h);

private:

inner_shape_type m_shape;

inner_strides_type m_strides;

inner_backstrides_type m_backstrides;

storage_type m_storage;

void init_tensor(const shape_type& shape, const strides_type& strides);

void init_from_python();

inner_shape_type& shape_impl() noexcept;

const inner_shape_type& shape_impl() const noexcept;

inner_strides_type& strides_impl() noexcept;

const inner_strides_type& strides_impl() const noexcept;

inner_backstrides_type& backstrides_impl() noexcept;

const inner_backstrides_type& backstrides_impl() const noexcept;

storage_type& storage_impl() noexcept;

const storage_type& storage_impl() const noexcept;

friend class xcontainer<pytensor<T, N, L>>;

friend class pycontainer<pytensor<T, N, L>>;

};

/***************************

* pytensor implementation *

***************************/

/**

* @name Constructors

//@{

/**

* Allocates an uninitialized pytensor that holds 1 element.

template <class T, std::size_t N, layout_type L>

inline pytensor<T, N, L>::pytensor()

: base_type()

{

m_shape = xtl::make_sequence<shape_type>(N, size_type(1));

m_strides = xtl::make_sequence<strides_type>(N, size_type(0));

init_tensor(m_shape, m_strides);

detail::default_initialize(m_storage);

}

/**

* Allocates a pytensor with a nested initializer list.

template <class T, std::size_t N, layout_type L>

inline pytensor<T, N, L>::pytensor(nested_initializer_list_t<T, N> t)

: base_type()

{

base_type::resize(xt::shape<shape_type>(t), layout_type::row_major);

nested_copy(m_storage.begin(), t);

}

template <class T, std::size_t N, layout_type L>

inline pytensor<T, N, L>::pytensor(pybind11::handle h, pybind11::object::borrowed_t b)

: base_type(h, b)

{

init_from_python();

}

template <class T, std::size_t N, layout_type L>

inline pytensor<T, N, L>::pytensor(pybind11::handle h, pybind11::object::stolen_t s)

: base_type(h, s)

{

init_from_python();

}

template <class T, std::size_t N, layout_type L>

inline pytensor<T, N, L>::pytensor(const pybind11::object& o)

: base_type(o)

{

init_from_python();

}

/**

* Allocates an uninitialized pytensor with the specified shape and

* layout.

* @param shape the shape of the pytensor

* @param l the layout_type of the pytensor

template <class T, std::size_t N, layout_type L>

inline pytensor<T, N, L>::pytensor(const shape_type& shape, layout_type l)

{

compute_strides(shape, l, m_strides);

init_tensor(shape, m_strides);

}

/**

* Allocates a pytensor with the specified shape and layout. Elements

* are initialized to the specified value.

* @param shape the shape of the pytensor

* @param value the value of the elements

* @param l the layout_type of the pytensor

template <class T, std::size_t N, layout_type L>

inline pytensor<T, N, L>::pytensor(const shape_type& shape,

const_reference value,

layout_type l)

{

compute_strides(shape, l, m_strides);

init_tensor(shape, m_strides);

std::fill(m_storage.begin(), m_storage.end(), value);

}

/**

* Allocates an uninitialized pytensor with the specified shape and strides.

* Elements are initialized to the specified value.

* @param shape the shape of the pytensor

* @param strides the strides of the pytensor

* @param value the value of the elements

template <class T, std::size_t N, layout_type L>

inline pytensor<T, N, L>::pytensor(const shape_type& shape,

const strides_type& strides,

const_reference value)

{

init_tensor(shape, strides);

std::fill(m_storage.begin(), m_storage.end(), value);

}

/**

* Allocates an uninitialized pytensor with the specified shape and strides.

* @param shape the shape of the pytensor

* @param strides the strides of the pytensor

template <class T, std::size_t N, layout_type L>

inline pytensor<T, N, L>::pytensor(const shape_type& shape,

const strides_type& strides)

{

init_tensor(shape, strides);

}

/**

* Allocates and returns an pytensor with the specified shape.

* @param shape the shape of the pytensor

template <class T, std::size_t N, layout_type L>

template <class S>

inline pytensor<T, N, L> pytensor<T, N, L>::from_shape(S&& shape)

{

detail::check_dims<shape_type>::run(shape.size());

auto shp = xtl::forward_sequence<shape_type, S>(shape);

return self_type(shp);

}

//@}

/**

* @name Copy semantic

//@{

/**

* The copy constructor.

template <class T, std::size_t N, layout_type L>

inline pytensor<T, N, L>::pytensor(const self_type& rhs)

: base_type(), semantic_base(rhs)

{

init_tensor(rhs.shape(), rhs.strides());

std::copy(rhs.storage().cbegin(), rhs.storage().cend(), this->storage().begin());

}

/**

* The assignment operator.

template <class T, std::size_t N, layout_type L>

inline auto pytensor<T, N, L>::operator=(const self_type& rhs) -> self_type&

{

self_type tmp(rhs);

*this = std::move(tmp);

return *this;

}

//@}

/**

* @name Extended copy semantic

//@{

/**

* The extended copy constructor.

template <class T, std::size_t N, layout_type L>

template <class E>

inline pytensor<T, N, L>::pytensor(const xexpression<E>& e)

: base_type()

{

shape_type shape = xtl::forward_sequence<shape_type, decltype(e.derived_cast().shape())>(e.derived_cast().shape());

strides_type strides = xtl::make_sequence<strides_type>(N, size_type(0));

compute_strides(shape, layout_type::row_major, strides);

init_tensor(shape, strides);

semantic_base::assign(e);

}

/**

* The extended assignment operator.

template <class T, std::size_t N, layout_type L>

template <class E>

inline auto pytensor<T, N, L>::operator=(const xexpression<E>& e) -> self_type&

{

return semantic_base::operator=(e);

}

//@}

template <class T, std::size_t N, layout_type L>

inline auto pytensor<T, N, L>::ensure(pybind11::handle h) -> self_type

{

return base_type::ensure(h);

}

template <class T, std::size_t N, layout_type L>

inline bool pytensor<T, N, L>::check_(pybind11::handle h)

{

return base_type::check_(h);

}

template <class T, std::size_t N, layout_type L>

inline void pytensor<T, N, L>::init_tensor(const shape_type& shape, const strides_type& strides)

{

npy_intp python_strides[N];

std::transform(strides.begin(), strides.end(), python_strides,

[](auto v) { return sizeof(T) * v; });

int flags = NPY_ARRAY_ALIGNED;

if (!std::is_const<T>::value)

{

flags |= NPY_ARRAY_WRITEABLE;

}

auto dtype = pybind11::detail::npy_format_descriptor<T>::dtype();

auto tmp = pybind11::reinterpret_steal<pybind11::object>(

PyArray_NewFromDescr(&PyArray_Type, (PyArray_Descr*) dtype.release().ptr(), static_cast<int>(shape.size()),

const_cast<npy_intp*>(shape.data()), python_strides,

nullptr, flags, nullptr));

if (!tmp)

{

throw std::runtime_error("NumPy: unable to create ndarray");

}

this->m_ptr = tmp.release().ptr();

m_shape = shape;

m_strides = strides;

adapt_strides(m_shape, m_strides, m_backstrides);

m_storage = storage_type(reinterpret_cast<pointer>(PyArray_DATA(this->python_array())),

static_cast<size_type>(PyArray_SIZE(this->python_array())));

}

template <class T, std::size_t N, layout_type L>

inline void pytensor<T, N, L>::init_from_python()

{

if (!static_cast<bool>(*this))

{

return;

}

if (PyArray_NDIM(this->python_array()) != N)

{

throw std::runtime_error("NumPy: ndarray has incorrect number of dimensions");

}

std::copy(PyArray_DIMS(this->python_array()), PyArray_DIMS(this->python_array()) + N, m_shape.begin());

std::transform(PyArray_STRIDES(this->python_array()), PyArray_STRIDES(this->python_array()) + N, m_strides.begin(),

[](auto v) { return v / sizeof(T); });

adapt_strides(m_shape, m_strides, m_backstrides);

if (L != layout_type::dynamic && !do_strides_match(m_shape, m_strides, L, 1))

{

throw std::runtime_error("NumPy: passing container with bad strides for layout (is it a view?).");

}

m_storage = storage_type(reinterpret_cast<pointer>(PyArray_DATA(this->python_array())),

this->get_buffer_size());

}

template <class T, std::size_t N, layout_type L>

inline auto pytensor<T, N, L>::shape_impl() noexcept -> inner_shape_type&

{

return m_shape;

}

template <class T, std::size_t N, layout_type L>

inline auto pytensor<T, N, L>::shape_impl() const noexcept -> const inner_shape_type&

{

return m_shape;

}

template <class T, std::size_t N, layout_type L>

inline auto pytensor<T, N, L>::strides_impl() noexcept -> inner_strides_type&

{

return m_strides;

}

template <class T, std::size_t N, layout_type L>

inline auto pytensor<T, N, L>::strides_impl() const noexcept -> const inner_strides_type&

{

return m_strides;

}

template <class T, std::size_t N, layout_type L>

inline auto pytensor<T, N, L>::backstrides_impl() noexcept -> inner_backstrides_type&

{

return m_backstrides;

}

template <class T, std::size_t N, layout_type L>

inline auto pytensor<T, N, L>::backstrides_impl() const noexcept -> const inner_backstrides_type&

{

return m_backstrides;

}

template <class T, std::size_t N, layout_type L>

inline auto pytensor<T, N, L>::storage_impl() noexcept -> storage_type&

{

return m_storage;

}

template <class T, std::size_t N, layout_type L>

inline auto pytensor<T, N, L>::storage_impl() const noexcept -> const storage_type&

{

return m_storage;

}

#endif

xtensor-python/include/xtensor-python/pytensor.hpp at master · serge-sans-paille/xtensor-python · GitHub

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