Name		Name	Last commit message	Last commit date
.github		.github
apidocs		apidocs
docs		docs
examples		examples
images		images
misc		misc
playground		playground
src/snakemake		src/snakemake
tests		tests
.dockerignore		.dockerignore
.gitattributes		.gitattributes
.gitignore		.gitignore
.gitpod.yml		.gitpod.yml
.readthedocs.yml		.readthedocs.yml
.sonarcloud.properties		.sonarcloud.properties
.test_durations		.test_durations
.wci.yml		.wci.yml
CHANGELOG.md		CHANGELOG.md
CODE_OF_CONDUCT.md		CODE_OF_CONDUCT.md
Dockerfile		Dockerfile
LICENSE.md		LICENSE.md
MANIFEST.in		MANIFEST.in
README.md		README.md
doc-environment.yml		doc-environment.yml
pixi.lock		pixi.lock
pyproject.toml		pyproject.toml
release-please-config.json		release-please-config.json
setup.py		setup.py

Repository files navigation

Snakemake

The Snakemake workflow management system is a tool to create reproducible and scalable data analyses. Snakemake is highly popular, with on average more than 7 new citations per week in 2021, and almost 400k downloads. Workflows are described via a human readable, Python based language. They can be seamlessly scaled to server, cluster, grid and cloud environments without the need to modify the workflow definition. Finally, Snakemake workflows can entail a description of required software, which will be automatically deployed to any execution environment.

Homepage: https://snakemake.github.io