Add GaqSummaryRepository and GaqSummaryInvalidationRepository and export them from the repositories index.

Update migration to replace the previous invalidated_at field with created_at and add updated_at to mirror default Sequelize tables.

…tedAt

Rename and change mcReproducible to be the coverage float not the boolean.

Forgot to remove.

Add GAQ summary invalidation whenever underlying data affecting GAQ changes.

These changes ensure GAQ summary caches/records are marked for recomputation whenever detectors, QC flags, or run QC times that influence GAQ summaries are modified.

Introduce background processing for GAQ summary invalidations and wire it into the app scheduler. Changes include:

- Add gaq config to services config.
- Move GaqService to lib/server/services/gaq and update imports across controllers/use-cases/tests.
- Extend GaqService to pop invalidations and recalculate summaries within a transaction.
- Add GaqWorker that guards concurrent runs and calls GaqService to process a batch of invalid summaries.
- Schedule the GaqWorker in application startup when GAQ recalculation is enabled.
- Add a soft-delete filter (where: { deleted: false }) when querying QC flags to map ids to run numbers as otherwise summary invalidations occur even on already deleted flags.

These changes enable periodic recalculation of GAQ summaries when invalidations are queued in the table.

…e/O2B-1563/Create-GAQ-summary-invalidation-mechanism

…ism' into feature/O2B-1564/Create-background-GAQ-summary-worker

…utput

Replace manual aggregation via getGaqCoverages with a direct query to GaqSummary table.

getSummary now builds a where clause and formats the summaries, if returned, via a new _formatSummary helper that now the mcReproducibleAsNotBad logic resides in.

This will be useful for when we want to set the cache header.

Add a POST /gaq/recalculate API and corresponding handler to trigger recalculation of GAQ summaries for a data pass and optional run ranges.

In GaqService: include invalidation flag on fetched summaries, propagate it to formatted output, ensure upserts update updatedAt, adjust transaction handling, and add recalculateSummaries(dataPassId, runNumbers) which resolves run ranges, enqueues invalidations for matching DataPassRun entries, and returns the number of summaries scheduled for recalculation.

- Add new getGAQSummaryDisplay.js to render GAQ state and per-run recalculate button for admins.
- Update getQcSummaryDisplay to accept an options.classes param and render an "invalidated" clock indicator when summary.invalidated is set.
  - implement recalculateGaqSummary(runNumbers) to POST to /api/qcFlags/summary/gaq/recalculate and refresh summaries.

…nto feature/O2B-1567/Add-resync-GAQ-summary-button

Validate GAQ summary invalidation behaviour on QC flag create/verify/delete, deleteAllForDataPass, explicit/default GAQ detector changes, and run QC time updates.

…ism' into feature/O2B-1564/Create-background-GAQ-summary-worker

Converted gaqWorker to a singleton.

This allows adding of pause() and resume() methods to prevent the worker from processing invalidated summaries during test execution.

Reduced the default GAQ recalculation period from 1 minute to 10 seconds to improve test suite performance.

Adds tests that verify the worker removes an invalidation and adds a summary, upserts for an already present summary, batch processes correctly, and doesn't run concurrent recalculations.

Update resetDatabaseContent to pause/resume the GAQ worker to avoid worker failures when the invalidation table is dropped.

GaqService summary recalculation and invalidation processing functions tested directly circumventing worker.

Tests verify correct computed fields, summary upsert, behaviour when no coverage exists, and batched invalidation processing.

…into feature/O2B-1567/Add-resync-GAQ-summary-button

Add a calculation_failed boolean column to gaq_summaries. This allows us to know whether a summary has been attempted to be calculated but unsuccessful due to limited data etc.

…e/O2B-1563/Create-GAQ-summary-invalidation-mechanism

…ism' into feature/O2B-1564/Create-background-GAQ-summary-worker

Remove not-null constraints from several GAQ summary columns in the migration to allow NULL when values are unavailable.

…into improv/O2B-1565/Migrate-GAQ-Summary-get-to-use-table

This reverts commit 6b72a6a.

…e/O2B-1563/Create-GAQ-summary-invalidation-mechanism

…ism' into feature/O2B-1564/Create-background-GAQ-summary-worker

…into improv/O2B-1565/Migrate-GAQ-Summary-get-to-use-table

…nto feature/O2B-1567/Add-resync-GAQ-summary-button

…ism' into feature/O2B-1564/Create-background-GAQ-summary-worker

…into improv/O2B-1565/Migrate-GAQ-Summary-get-to-use-table

…nto feature/O2B-1567/Add-resync-GAQ-summary-button

Test had a leftover button click that was meant to be deleted.