Allen Institute

Please visit http://alleninstitute.github.io/ for more information.

Verified
We've verified that the organization AllenInstitute controls the domain:
- alleninstitute.org
Learn more about verified organizations

Overview
Repositories
Projects
Packages
People

Pinned Loading

AllenSDK AllenSDK Public

code for reading and processing Allen Institute for Brain Science data

Jupyter Notebook 396 163
dipde dipde Public

Numerical solver for coupled population density equations

Python 26 16

Repositories

Type Language

Select language

All AMPL C C++ CSS Dockerfile HTML IGOR Pro Java JavaScript Jinja Jupyter Notebook MATLAB Nextflow Pascal Perl Python R Ruby SCSS Shell TypeScript

Sort

OCS-Submission-Capsule-API Public

AllenInstitute/OCS-Submission-Capsule-API's past year of commit activity

Python 0 0 0 0 Updated Aug 29, 2026
biofile-finder Public
An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, and direct viewing in common industry applications or in our web-based 3D Volume Viewer.

AllenInstitute/biofile-finder's past year of commit activity

TypeScript 21 BSD-3-Clause 10 64 12 Updated Aug 29, 2026
ccf_streamlines Public
This package supports projection of Common Cortical Framework (CCF) volumetric data and coordinate data on to flattened representations.

AllenInstitute/ccf_streamlines's past year of commit activity

Python 1 1 4 5 Updated Aug 29, 2026
neuroglancer Public Forked from google/neuroglancer
WebGL-based viewer for volumetric data

AllenInstitute/neuroglancer's past year of commit activity

TypeScript 0 Apache-2.0 397 0 1 Updated Aug 28, 2026
axonal_connectomics Public
Repository for tools developed for axonal connectomics

AllenInstitute/axonal_connectomics's past year of commit activity

Jupyter Notebook 2 1 6 2 Updated Aug 28, 2026
ac_reconstruction_analysis Public

AllenInstitute/ac_reconstruction_analysis's past year of commit activity

Python 0 GPL-3.0 0 1 1 Updated Aug 28, 2026
ac_pcg Public

AllenInstitute/ac_pcg's past year of commit activity

Jupyter Notebook 1 BSD-2-Clause 0 0 0 Updated Aug 28, 2026
axonal_connectomics_processing Public
Software environments and deployment for axonal connectomics

AllenInstitute/axonal_connectomics_processing's past year of commit activity

Python 0 GPL-3.0 0 0 5 Updated Aug 28, 2026
ac_segmentation Public

AllenInstitute/ac_segmentation's past year of commit activity

Python 0 GPL-3.0 0 1 0 Updated Aug 28, 2026
dynamic_routing_analysis Public
Tools for accessing, processing and presenting data from Dynamic Routing experiments.

AllenInstitute/dynamic_routing_analysis's past year of commit activity

Jupyter Notebook 3 0 0 0 Updated Aug 28, 2026