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Birol Lab · GitHub

Birol Lab

Bioinformatics Technology Lab

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ntRoot ntRoot Public

🌳 Scalable ancestry from genomic data

Python 13
ntSynt ntSynt Public

Detecting multi-genome synteny using minimizer graph mapping

Python 115 2
goldrush goldrush Public

Linear-time de novo Long Read Assembler

C++ 43 2
ntEdit ntEdit Public

✏️ Genome assembly polishing & SNV detection

C++ 74 10
AMPlify AMPlify Public

Attentive deep learning model for antimicrobial peptide prediction

Python 65 16
NanoSim NanoSim Public

Nanopore sequence read simulator

Python 311 64

Repositories

Type Language Sort

ntHash Public
Fast hash function for DNA/RNA sequences

BirolLab/ntHash's past year of commit activity

C++ 111 MIT 15 3 3 Updated Aug 24, 2026
ntSynt Public
Detecting multi-genome synteny using minimizer graph mapping

BirolLab/ntSynt's past year of commit activity

Python 115 GPL-3.0 2 1 0 Updated Aug 20, 2026
btl Public
🔬 Bioinformatics Technology Lab, Genome Sciences Centre

BirolLab/btl's past year of commit activity

HTML 2 3 4 0 Updated Aug 20, 2026
ntRoot Public
🌳 Scalable ancestry from genomic data

BirolLab/ntRoot's past year of commit activity

Python 13 GPL-3.0 0 1 0 Updated Aug 18, 2026
ntSynt-viz Public
Multi-genome synteny block visualization tool

BirolLab/ntSynt-viz's past year of commit activity

HTML 65 GPL-3.0 5 0 0 Updated Aug 6, 2026
ntJoin Public
🔗Genome assembly scaffolder using minimizer graphs

BirolLab/ntJoin's past year of commit activity

Python 88 GPL-3.0 13 0 0 Updated Aug 5, 2026
mtGrasp Public
mtGrasp: de novo reference-grade mitochondrial genome assembly and standardization

BirolLab/mtGrasp's past year of commit activity

Python 24 GPL-3.0 3 2 0 Updated Jun 29, 2026
ntStat Public
ntStat: a toolkit for statistical analysis of k-mer frequency and depth

BirolLab/ntStat's past year of commit activity

C++ 8 GPL-3.0 0 0 0 Updated Jun 26, 2026
LLM-Clinical-Trial-Annotator Public
An LLM-based peptide clinical trial annotation tool/workflow.

BirolLab/LLM-Clinical-Trial-Annotator's past year of commit activity

Python 0 0 0 0 Updated Jun 22, 2026
ntEdit Public
✏️ Genome assembly polishing & SNV detection

BirolLab/ntEdit's past year of commit activity

C++ 74 GPL-3.0 10 0 0 Updated Jun 12, 2026

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