Updated deeplabcut installation in colab notebooks - #2376
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MMathisLab merged 1 commit intoSep 12, 2023
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Git really does not like notebooks - did not run them locally, only changed cell contents but still vast difference in the pull request. I tested two versions (where the models train or analyze videos correctly): COLAB_DEMO_mouse_openfield.ipynb (see the updated file here) which installs by cloning the repo, as it uses the example data: # Clone the entire deeplabcut repo so we can use the demo data:
!git clone -l -s https://github.com/DeepLabCut/DeepLabCut.git cloned-DLC-repo
%cd cloned-DLC-repo
!ls%cd /content/cloned-DLC-repo/examples/openfield-Pranav-2018-10-30
!ls# Install the latest DeepLabCut version (this will take a few minutes to install all the dependencies!)
%cd /content/cloned-DLC-repo/
!pip install ".[tf]"and COLAB_3miceDemo.ipynb (see the updated file here): # Install the latest DeepLabCut version:
!pip install "deeplabcut[tf]" |
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MMathisLab
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Sep 12, 2023
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This fixes the issue mentioned in #2372 for users in the google colab example notebooks (colab updated the default version of tensorflow from 2.10 to 2.13).