Drexel's EESI Lab.

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themetagenomics themetagenomics Public

R 24 4
PyFeast PyFeast Public

A Python interface to the Feature Selection Toolkit, contains JMI, BetaGamma, CMIM, CondMI, DISR, ICAP, and mRMR

Python 19 3
microbiome_embeddings microbiome_embeddings Public

Python 11 1
ISM ISM Public

Forked from z2e2/ISM

Jupyter Notebook 9 3
Comp_Metagenomics_resources Comp_Metagenomics_resources Public

Materials for Computational Metagenomics class developed for NSF TUES project

Jupyter Notebook 8 1
carmania carmania Public

Context-Aware Regularization with Markovian Integration for Attention-Based Nucleotide Analysis [NeurIPS2025]

Jupyter Notebook 8 2

Repositories

Type Language Sort

dna-ssl-augmentations Public

EESI/dna-ssl-augmentations's past year of commit activity

Python 0 0 0 0 Updated Jul 30, 2026
carmania Public
Context-Aware Regularization with Markovian Integration for Attention-Based Nucleotide Analysis [NeurIPS2025]

EESI/carmania's past year of commit activity

Jupyter Notebook 8 MIT 2 0 0 Updated May 21, 2026
cross-modal-biological-augmentation Public

EESI/cross-modal-biological-augmentation's past year of commit activity

Python 0 0 0 0 Updated May 13, 2026
dna-robustness-eval Public

EESI/dna-robustness-eval's past year of commit activity

Python 0 0 0 0 Updated Apr 30, 2026
glm-epinet-pyt Public Forked from ghproducts/glm-epinet-pyt
Pytorch implementation of Epinet, along with usage for genomic language models

EESI/glm-epinet-pyt's past year of commit activity

Python 0 1 0 0 Updated Mar 13, 2026
MicroTraitLLM Public
A retrieval-augmented generation (RAG) LLM which utilizes zero-shot and single-shot prompting to give specific, citation-based answers for researchers.

EESI/MicroTraitLLM's past year of commit activity

Python 0 2 1 1 Updated Mar 9, 2026
Naive_Bayes Public Forked from AlexCristian/Naive_Bayes
A Naive Bayes classifier for metagenomic data.

EESI/Naive_Bayes's past year of commit activity

C++ 2 5 0 0 Updated Feb 6, 2026
NBC-novelty-detection Public Forked from key-r-code/NBC-novelty-detection
NBC++ novelty detection repo

EESI/NBC-novelty-detection's past year of commit activity

Python 0 MIT 1 0 0 Updated Jan 31, 2026
nevermore Public

EESI/nevermore's past year of commit activity

Python 1 1 0 0 Updated Jan 18, 2026
bio-course-materials Public Forked from gditzler/bio-course-materials
Course materials for a bioinformatics course.

EESI/bio-course-materials's past year of commit activity

Jupyter Notebook 4 GPL-3.0 5 0 1 Updated Nov 5, 2025