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ENCODE DCC · GitHub

ENCODE DCC

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  1. encoded encoded Public

    Metadata database for ENCODE project

    JavaScript 115 47

  2. snovault snovault Public

    The SnoVault general purpose hybrid object-relational database

    Python 16 8

  3. checkfiles checkfiles Public

    Files are checked to see if the MD5 sum (both for gzipped and ungzipped) is identical to the submitted metadata, as well as run through the validateFiles program from jksrc.

    Python 2

  4. pyencoded-tools pyencoded-tools Public

    Jupyter Notebook 12 13

  5. WranglerScripts WranglerScripts Public

    Collection of scripts used by the wranglers to interact with the servers

    Python 5 4

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Showing 10 of 125 repositories
  • genomic-data-service Public

    Flask based web service providing genomic region search, based on regulomedb.org

    ENCODE-DCC/genomic-data-service's past year of commit activity
    Python 5 MIT 2 1 1 Updated Aug 10, 2026
  • encoded Public

    Metadata database for ENCODE project

    ENCODE-DCC/encoded's past year of commit activity
    JavaScript 115 MIT 47 4 61 Updated Aug 5, 2026
  • geo-submission Public
    ENCODE-DCC/geo-submission's past year of commit activity
    Python 3 MIT 2 0 3 Updated Jul 9, 2026
  • rna-seq-pipeline Public
    ENCODE-DCC/rna-seq-pipeline's past year of commit activity
    Python 168 MIT 64 8 2 Updated Apr 13, 2026
  • long-read-rna-pipeline Public

    ENCODE long read RNA-seq pipeline

    ENCODE-DCC/long-read-rna-pipeline's past year of commit activity
    WDL 54 MIT 14 1 1 Updated Apr 13, 2026
  • caper Public

    Cromwell/WDL wrapper for Python

    ENCODE-DCC/caper's past year of commit activity
    Python 58 MIT 18 31 2 Updated Feb 13, 2026
  • encode-data-usage-examples Public
    ENCODE-DCC/encode-data-usage-examples's past year of commit activity
    Jupyter Notebook 11 MIT 8 0 1 Updated Sep 11, 2025
  • cdk-kubernetes-cherry Public

    EKS CDK deployment and apps for cherry-lab account

    ENCODE-DCC/cdk-kubernetes-cherry's past year of commit activity
    Python 0 0 0 0 Updated Jun 3, 2025
  • encValData Public
    ENCODE-DCC/encValData's past year of commit activity
    AngelScript 5 MIT 6 0 0 Updated May 27, 2025
  • regulome-encoded Public

    Temp repo for regulome development

    ENCODE-DCC/regulome-encoded's past year of commit activity
    JavaScript 1 MIT 2 2 16 Updated Nov 15, 2024
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