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Bound peak memory in combineSplicedTranscriptModels() by keeping combined models in long form

othersimprovements that do not belong to any of the other categoriesimprovements that do not belong to any of the other categories

Status: Open.

Optimization

#587 In GoekeLab/bambu;

· lingminhao opened on Aug 19, 2026

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user community pull request

BiocParallel error

Status: Open.

#551 In GoekeLab/bambu;

· sophiachen1 opened on Apr 4, 2026

BiocParallel errors when running bambu

Status: Open.

#541 In GoekeLab/bambu;

· lyj95618 opened on Feb 12, 2026

which version of xgboost is ok?

Status: Open.

#539 In GoekeLab/bambu;

· lingfengxu opened on Feb 9, 2026

High NDR values when quantifying transposable elements in exosomes

Status: Open.

#536 In GoekeLab/bambu;

· NaixiangYu opened on Jan 29, 2026

error when using bambu to quantify SIRV

Status: Open.

#532 In GoekeLab/bambu;

· yinshiyi opened on Jan 20, 2026

Dependency issues when installing

Status: Open.

#523 In GoekeLab/bambu;

· sophiachen1 opened on Jan 11, 2026

Error while running bambu on single-cell long-read RNA-seq data

Status: Open.

#514 In GoekeLab/bambu;

· MapleLin-Bio opened on Dec 23, 2025

Error while running bambu on multiple samples

Status: Open.

#513 In GoekeLab/bambu;

· Motoufiq opened on Dec 4, 2025

questions about default NDR values if running in de novo mode

Status: Open.

#504 In GoekeLab/bambu;

· alexyfyf opened on Sep 9, 2025

Possibility to extend known gene models by adding UTRs

Status: Open.

#500 In GoekeLab/bambu;

· Annie-GW opened on Jun 26, 2025

Fusion Gene Analysis

Status: Open.

#498 In GoekeLab/bambu;

· mpizzagalli777 opened on Jun 24, 2025