Institute for Genome Sciences

IGS has helped revolutionize genomic discoveries in medicine, agriculture, environmental science and biodefense.

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biocode biocode Public

Forked from jorvis/biocode

Bioinformatics script collection

Python 7 1
portal_client portal_client Public

Python-based client for downloading data made available through portals powered by the GDC-based portal system..

Python 23 18
OSDF OSDF Public

Forked from victor73/OSDF

Open Science Data Framework (OSDF)

JavaScript 8 2
osdf-python osdf-python Public

A Python OSDF (Open Science Data Framework) client

Python 3 3
Chiron Chiron Public

Tools and utilities for running Dockerized metagenomics tools in the Cloud

C++ 22 18
FADU FADU Public

Feature Aggregate Depth Utility

Julia 12 1

Repositories

Type Language Sort

gEAR Public
The gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Seq and more.

IGS/gEAR's past year of commit activity

Jupyter Notebook 22 AGPL-3.0 6 239 (12 issues need help) 2 Updated Aug 28, 2026
portal_client Public
Python-based client for downloading data made available through portals powered by the GDC-based portal system..

IGS/portal_client's past year of commit activity

Python 23 MIT 18 11 0 Updated Jun 10, 2026
FADU Public
Feature Aggregate Depth Utility

IGS/FADU's past year of commit activity

Julia 12 AGPL-3.0 1 2 0 Updated Aug 20, 2024
rnaseq-docker Public archive
Dockerized version of the IGS transciptomics pipeline and associated utilities

IGS/rnaseq-docker's past year of commit activity

Python 0 0 0 2 Updated Jul 6, 2024
ergatis Public Forked from jorvis/ergatis
Ergatis is a web-based utility that is used to create, run, and monitor reusable computational analysis pipelines.

IGS/ergatis's past year of commit activity

Perl 0 15 0 0 Updated Jun 24, 2024
osdf-nodejs-client Public
A node.js client for the Open Science Data Framework (OSDF)

IGS/osdf-nodejs-client's past year of commit activity

JavaScript 1 MIT 0 0 1 Updated Jun 17, 2024
disease-ontology Public
Disease Ontology

IGS/disease-ontology's past year of commit activity

0 0 0 0 Updated Mar 6, 2023
report-generator Public
Repository for new python based report and bdbag generator.

IGS/report-generator's past year of commit activity

Python 0 0 0 0 Updated Jan 12, 2023
portal-ui Public
UI for IGS project portals

IGS/portal-ui's past year of commit activity

JavaScript 4 Apache-2.0 19 0 2 Updated Dec 13, 2022
rnaseq-pipeline Public archive
IGS Transcriptomics Pipeline

IGS/rnaseq-pipeline's past year of commit activity

Perl 1 0 0 0 Updated Mar 16, 2022