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LKremer (Lukas PM Kremer) · GitHub

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LKremer/README.md

Hi there

I'm Lukas, a bioinformatics researcher at Cellzome (GSK). I share Python and R code related to bioinformatics, data science, omics and the occasional fun code project.

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  1. scbs scbs Public

    Python package with CLI for the analysis of single cell methylation data. Now known as MethSCAn: https://github.com/anders-biostat/MethSCAn

    Python 12 12

  2. ggpointdensity ggpointdensity Public

    📈 📊 Introduces geom_pointdensity(): A Cross Between a Scatter Plot and a 2D Density Plot.

    R 452 26

  3. ursgal/ursgal ursgal/ursgal Public

    Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis

    Python 45 31

  4. MSA_trimmer MSA_trimmer Public

    Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.

    Python 17 2

  5. showTree showTree Public

    showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.

    Python 31 8

  6. CAFE_fig CAFE_fig Public

    A tool to extract and visualize the results of CAFE (Computational Analysis of gene Family Evolution)

    Python 66 17

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