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Leiden University Medical Center · GitHub

Leiden University Medical Center

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Leiden, The Netherlands
http://www.lumc.nl/

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pytest-workflow pytest-workflow Public

Configure workflow/pipeline tests using yaml files.

Python 71 9
EfDS EfDS Public

Materials for Essentials for Data Science, a course of Statistics and Data Science master at Leiden University.

Jupyter Notebook 43 43
kPAL kPAL Public

Analysis toolkit and programming library for k-mer profiles

Python 31 5
fastqsplitter fastqsplitter Public

Splits fastq files evenly

Python 24 8
dgeAnalysis dgeAnalysis Public

R package with Shiny application for DGE analysis

R 13 5
ribosome-profiling-analysis-framework ribosome-profiling-analysis-framework Public

Ribosome profiling analysis framework as described in de Klerk E., Fokkema I.F.A.C et al (2015). Alignment, triplet periodicity analysis, detecting ORFs.

PHP 12 5

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cram-archiver Public

LUMC/cram-archiver's past year of commit activity

Python 1 AGPL-3.0 0 1 0 Updated Aug 5, 2026
HAMLET Public
RNA-seq pipeline for AML diagnostics developed in collaboration with the LUMC Hematology department

LUMC/HAMLET's past year of commit activity

Python 12 MIT 7 1 0 Updated Jul 14, 2026
OpalLUMCADM Public
R package to interact between Opal and R

LUMC/OpalLUMCADM's past year of commit activity

R 1 AGPL-3.0 0 3 0 Updated May 26, 2026
EfDS Public
Materials for Essentials for Data Science, a course of Statistics and Data Science master at Leiden University.

LUMC/EfDS's past year of commit activity

Jupyter Notebook 43 GPL-3.0 43 0 0 Updated May 18, 2026
array-as-vcf Public

LUMC/array-as-vcf's past year of commit activity

Python 1 MIT 1 1 1 Updated Apr 13, 2026
rose-dt Public
Reciprocal Soft-Clip Events Detection Tool

LUMC/rose-dt's past year of commit activity

Rust 0 0 0 0 Updated Mar 30, 2026
dbexport Public
Export Oracle database objects (packages, stored procedures, triggers, etc.) to SQL files.

LUMC/dbexport's past year of commit activity

Java 0 MIT 0 0 0 Updated Feb 19, 2026
rcourse Public
Using R for Data Analysis

LUMC/rcourse's past year of commit activity

R 4 GPL-3.0 1 7 0 Updated Dec 15, 2025
fmb2txt Public
Convert Oracle Forms FMB source files into XML and readable TXT files

LUMC/fmb2txt's past year of commit activity

Java 0 MIT 0 0 0 Updated Jun 12, 2025
Argalaxy-ImmuneRepertoire Public Forked from ErasmusMC-Bioinformatics/Argalaxy-ImmuneRepertoire
Argalaxy Immune Repertoire pipeline

LUMC/Argalaxy-ImmuneRepertoire's past year of commit activity

R 1 MIT 1 0 0 Updated Apr 30, 2025

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