Integrate spatial transcripomics with universal gene, cell, and tissue embeddings.

For more details, please check out our publication.

For code and data in the manuscript 'Towards a universal spatial molecular atlas of the mouse brain', please go to paper_code.

We provide an interactive online database of the molCCF.

FuseMap package requires a standard computer with optional GPU to support the in-memory operations.

This package is supported for Linux. The package has been tested on the following system:

• Linux: Ubuntu 20.04

FuseMap mainly depends on the Python scientific stack.

dgl
numpy
scipy
scikit-learn
pandas
pytorch
scanpy
seaborn

• Read the tutorial here .

If you find FuseMap useful for your work, please cite our paper:

Yichun He, Hao Sheng, Hailing Shi, Wendy Xueyi Wang, Zefang Tang, Jia Liu, Xiao Wang. Towards a universal spatial molecular atlas of the mouse brain. Preprint at bioRxiv https://www.biorxiv.org/content/10.1101/2024.05.27.594872v1 (2024).