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Manninm · GitHub

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Pinned Loading

  1. PcaPlot PcaPlot Public

    R script to make Pca plots given a gene expression matrix and pheno table

    R

  2. PlotCluster PlotCluster Public

    PlotCluster

    R

  3. MiKTMCSnakemakePipeline MiKTMCSnakemakePipeline Public

    Attempt at snakemake pipeline. Pyflow was forked from https://github.com/crazyhottom but the Snakefile infrastructure and rule calling was inspired by https://github.com/snakemake-workflows

    R 1

  4. SlurmMiKTMC SlurmMiKTMC Public

    Snakemake pipeline modified to run on Greatlakes with Slurm job handler

    R 1

  5. VcfAnnotator VcfAnnotator Public

    Python

  6. InterferonScore InterferonScore Public

    A script to run interferon response scores given an expression matrix and list of gene symbols

    R

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