Click on Colab badge to open the notebook on Colab:

Note that on 2023 May 14, Colab was using Python3.10. I changed the path in the script.

You will have to create a python env using python3.10 if you install open source pymol locally:

conda create -n pymol310 python=3.10 
conda -c conda install -c conda-forge pymol-open-source

See the first cell in the notebook for install instructions. I checked that this still works on 1 September 2022.

The installPyMOL snippet will install PyMOL with one click of a button. The installation process takes 5-10 minutes, so be patient. A progress bar monitors the progress of the installation.

This readme file is a work in progress.

Pre-requisite: a Google Drive account.

This action will open the snippet notebook on Colab. The top of the screen should look like the following:

Use the File/Save copy in Drive pulldown menu item. If you run some code cells, you might get a message like the following:

Ignore this warning. Click on run anyway.

Paste the URL onto the line Custom snippet notebook URL:

This step takes 5-10 minutes. Ignore this warning:

The result looks like the following image:

• easypymol
• pymolshortcuts
• pymolsnips
• orgpymolpysnips
• rstudiopymolpysnips
• taggedpymolpysnips
• jupyterlabpymolpysnips
• colabPyMOLpySnips
• PyMOLwallhangings

• NIH: R01 CA242845, R01 AI088011
• NIH: P30 CA225520 (PI: R. Mannel); P20GM103640 and P30GM145423 (PI: A. West)