FazBrowse GitHub Viewer | Trending |
URL:
| Home
Tools: [Download Repo ZIP]   [Original HTTPS Page]

New module: Proteinfold (protein structure AI inference programs - v2 metrics) by keiran-rowell-unsw · Pull Request #366 · MultiQC/test-data · GitHub

New module: Proteinfold (protein structure AI inference programs - v2 metrics) - #366

Draft
keiran-rowell-unsw wants to merge 1 commit into
MultiQC:mainfrom
Australian-Structural-Biology-Computing:main
Draft

New module: Proteinfold (protein structure AI inference programs - v2 metrics)#366
keiran-rowell-unsw wants to merge 1 commit into
MultiQC:mainfrom
Australian-Structural-Biology-Computing:main

Conversation

keiran-rowell-unsw commented Jan 8, 2026
edited
Loading

Copy link
Copy Markdown

Test data for a MultiQC module for nf-core/proteinfold (draft PR here)

Covers the main metrics in simple .tsv format. See the EBI guide for the description of confidence scores common to all AI protein structure inference codes:

  • MSA - Multiple Sequence Alignment (for depth of homologues sequences)
  • pLDDT - predicted Local Distance Difference Test (spatial error per amino acid residue position)
  • pTM - predicted Template Modelling (global structure accuracy)
  • ipTM - interface score (predicting relative positional accuracy of the subunits)
  • PAE - [excluded from lightweight MultiQC report] predicted aligned error (matrix of relative positional error between every pair of residues)

keiran-rowell-unsw changed the title proteinfold v2 metrics from any protein structure prediction models New module: Proteinfold (protein structure AI inference programs - v2 metrics) Jan 8, 2026
keiran-rowell-unsw marked this pull request as draft January 11, 2026 22:49
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters. Learn more about bidirectional Unicode characters
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant


Back | FazBrowse Home | New Git URL