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National Institute of Biology

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pISA-tree pISA-tree Public

pISA-tree: Standard project directory tree ( ISA framework compliant )

Batchfile 7 3
BoolDog BoolDog Public

A Python package for analyses of Boolean and semi-quantitative Boolean networks.

Jupyter Notebook
skm-tools skm-tools Public

Scripts and utilities for leveraging SKM resources

Jupyter Notebook 3
multiOmics-integration multiOmics-integration Public

Potato ‘omics data analysis pipelines

HTML 4 3
Bacillus-Pti5 Bacillus-Pti5 Public

understanding endophyte/plant relationships

HTML
Adapt_field_ML Adapt_field_ML Public

Potato yield can be predicted by using drone-captured and environmental measurements early in the growing season

Jupyter Notebook

Repositories

Type Language Sort

HCS-proc Public
Data processing pipeline for High-Content Screening using CellProfiler data.

NIB-SI/HCS-proc's past year of commit activity

Python 0 MIT 0 0 0 Updated Aug 24, 2026
cdr_FS Public

NIB-SI/cdr_FS's past year of commit activity

Python 0 MIT 0 0 0 Updated Aug 21, 2026
ECCB2026_T12 Public
Resources for plant sciences: data integration and interpretation tools

NIB-SI/ECCB2026_T12's past year of commit activity

HTML 0 MIT 1 0 0 Updated Aug 20, 2026
miR160-HR Public
miR160 in potato hypersensitive response to potato virus Y

NIB-SI/miR160-HR's past year of commit activity

R 0 MIT 0 0 0 Updated Aug 18, 2026
BoolDog Public
A Python package for analyses of Boolean and semi-quantitative Boolean networks.

NIB-SI/BoolDog's past year of commit activity

Jupyter Notebook 0 GPL-3.0 0 6 0 Updated Aug 10, 2026
skm-tools Public
Scripts and utilities for leveraging SKM resources

NIB-SI/skm-tools's past year of commit activity

Jupyter Notebook 3 GPL-3.0 0 0 2 Updated Jul 27, 2026
polyase Public
A package for analyzing allele-specific expression in polyploid organisms

NIB-SI/polyase's past year of commit activity

Python 0 MIT 0 0 0 Updated Jul 8, 2026
longrnaseq Public
Long-read RNA-seq nextflow pipeline for quantification, novel isoform discovery and quality control

NIB-SI/longrnaseq's past year of commit activity

HTML 5 MIT 0 1 0 Updated Jul 6, 2026
skm-translate Public
Translation pipeline from SKM to crop and crop wild relatives

NIB-SI/skm-translate's past year of commit activity

HTML 0 MIT 1 0 0 Updated Jun 22, 2026
skm-pss-export Public
Export adapters from PSS neo4j db to other formats

NIB-SI/skm-pss-export's past year of commit activity

Python 0 MIT 0 7 0 Updated Jun 1, 2026

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