Nesvilab

Alexey Nesvizhskii's proteome bioinformatics group.

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FragPipe FragPipe Public

A cross-platform proteomics data analysis suite

Java 317 48
MSFragger MSFragger Public

Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics

HTML 132 12
MSBooster MSBooster Public

MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring

Java 22 2
philosopher philosopher Public

PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering

Go 129 22
PTM-Shepherd PTM-Shepherd Public

A tool for summarizing open search results

Java 16 8
IonQuant IonQuant Public

A label free quantification tool.

20 9

Repositories

Type Language Sort

MSBooster Public
MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring

Nesvilab/MSBooster's past year of commit activity

Java 22 Apache-2.0 2 0 0 Updated Aug 28, 2026
FragSummarizer Public

Nesvilab/FragSummarizer's past year of commit activity

Java 1 Apache-2.0 0 0 0 Updated Aug 21, 2026
FragPipeAnalystR Public

Nesvilab/FragPipeAnalystR's past year of commit activity

R 10 GPL-3.0 4 11 6 Updated Aug 21, 2026
PepCentric Public
Search proteins and peptides against repository-scale MS/MS spectra within seconds

Nesvilab/PepCentric's past year of commit activity

1 0 0 0 Updated Aug 13, 2026
FragPipe Public
A cross-platform proteomics data analysis suite

Nesvilab/FragPipe's past year of commit activity

Java 317 48 39 1 Updated Aug 7, 2026
philosopher Public
PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering

Nesvilab/philosopher's past year of commit activity

Go 129 GPL-3.0 22 53 (1 issue needs help) 0 Updated Jul 18, 2026
nesvilab.github.io Public
Nesvilab website

Nesvilab/nesvilab.github.io's past year of commit activity

Less 1 Apache-2.0 2 0 0 Updated Jul 15, 2026
TMT-Integrator Public
A tool integrates channel abundances from multiple TMT samples and exports a general report for downstream analysis.

Nesvilab/TMT-Integrator's past year of commit activity

Java 15 Apache-2.0 2 1 0 Updated Jun 25, 2026
pwiz Public Forked from ProteoWizard/pwiz
The ProteoWizard Library is a set of software libraries and tools for rapid development of mass spectrometry and proteomic data analysis software.

Nesvilab/pwiz's past year of commit activity

C# 0 Apache-2.0 126 0 0 Updated Jun 17, 2026
FragPipe-SpecLib Public
FragPipe-SpecLib: Simple library generation for FragPipe

Nesvilab/FragPipe-SpecLib's past year of commit activity

Python 0 BSD-3-Clause 1 1 1 Updated May 29, 2026