Papenfuss Lab

Walter and Eliza Hall Institute of Medical Research

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gridss gridss Public

GRIDSS: the Genomic Rearrangement IDentification Software Suite

Java 286 73
StructuralVariantAnnotation StructuralVariantAnnotation Public

R package designed to simplify structural variant analysis

R 74 14
bionix bionix Public

Functional highly reproducible bioinformatics pipelines

Nix 112 8
clove clove Public

classification of higher-order structural variants from breakpoint data

Java 11 2
VIRUSBreakend VIRUSBreakend Public

Viral Integration Recognition Using Single Breakends

4

Repositories

Type Language Sort

proteindj Public
Official repository for the ProteinDJ protein design pipeline

PapenfussLab/proteindj's past year of commit activity

Python 127 26 1 0 Updated Aug 28, 2026
this_ai_is_bananas Public

PapenfussLab/this_ai_is_bananas's past year of commit activity

HTML 0 GPL-3.0 0 0 0 Updated Aug 27, 2026
dl_binder_design Public Forked from nrbennet/dl_binder_design

PapenfussLab/dl_binder_design's past year of commit activity

Python 0 MIT 98 0 0 Updated Aug 10, 2026
bionix Public
Functional highly reproducible bioinformatics pipelines

PapenfussLab/bionix's past year of commit activity

Nix 112 BSD-3-Clause 8 2 0 Updated Aug 10, 2026
FreeBindCraft Public Forked from cytokineking/FreeBindCraft
BindCraft modified to make PyRosetta use and installation optional: no license needed

PapenfussLab/FreeBindCraft's past year of commit activity

Python 0 32 0 0 Updated Jul 20, 2026
Genomics_nextflow_pipeline Public

PapenfussLab/Genomics_nextflow_pipeline's past year of commit activity

Perl 1 1 2 0 Updated Jun 16, 2026
fampnn Public Forked from richardshuai/fampnn
Sidechain conditioning and modeling for full-atom protein sequence design

PapenfussLab/fampnn's past year of commit activity

Python 0 MIT 26 0 0 Updated May 26, 2025
gridss Public
GRIDSS: the Genomic Rearrangement IDentification Software Suite

PapenfussLab/gridss's past year of commit activity

Java 286 73 89 6 Updated May 21, 2025
PDM_TSO500_project Public
Analysis of TSO500 sequencing data in "Genomic copy number burden distinguishes the diagnosis and prognosis of primary dermal melanoma"

PapenfussLab/PDM_TSO500_project's past year of commit activity

Nextflow 0 0 0 0 Updated May 1, 2025
RFdiffusion Public Forked from RosettaCommons/RFdiffusion
Code for running RFdiffusion

PapenfussLab/RFdiffusion's past year of commit activity

Python 0 648 0 0 Updated Feb 18, 2025