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Refractive Index Imaging · GitHub

Refractive Index Imaging

software libraries for refractive index imaging in 2D and in 3D

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ODTbrain ODTbrain Public

Python library for diffraction tomography with the Born and Rytov approximations

Python 58 13
nrefocus nrefocus Public

python library for numerical focusing (refocusing, autofocusing) of complex wave fields

Python 11 4
qpimage qpimage Public

Python library for manipulating quantitative phase images

Python 1 4
qpsphere qpsphere Public

Python library for spheres in quantitative phase imaging

Python 6 2
qpformat qpformat Public

Python library for opening quantitative phase imaging file formats

Python 1 2
DryMass DryMass Public

manipulation and analysis of phase microscopy data

Python 3 1

Repositories

Type Language Sort

qpretrieve Public
Phase retrieval from holograms

RI-imaging/qpretrieve's past year of commit activity

Python 6 MIT 3 6 1 Updated Jul 8, 2026
xpunwrap Public
Phase Unwrapping on GPU (and CPU), with Python

RI-imaging/xpunwrap's past year of commit activity

Python 0 MIT 0 2 0 Updated Jul 7, 2026
nrefocus Public
python library for numerical focusing (refocusing, autofocusing) of complex wave fields

RI-imaging/nrefocus's past year of commit activity

Python 11 BSD-3-Clause 4 9 0 Updated Jun 29, 2026
radontea Public
python library for tomographic image reconstruction

RI-imaging/radontea's past year of commit activity

Python 17 BSD-3-Clause 8 1 0 Updated Nov 3, 2025
ODTbrain Public
Python library for diffraction tomography with the Born and Rytov approximations

RI-imaging/ODTbrain's past year of commit activity

Python 58 BSD-3-Clause 13 7 0 Updated Mar 31, 2025
qpformat Public
Python library for opening quantitative phase imaging file formats

RI-imaging/qpformat's past year of commit activity

Python 1 MIT 2 3 0 Updated Feb 7, 2025
flimage Public
Python library for manipulating fluorescence microscopy series data

RI-imaging/flimage's past year of commit activity

Python 0 MIT 2 1 0 Updated Feb 7, 2025
CellReel Public
graphical user interface for refractive index and fluorescence tomography

RI-imaging/CellReel's past year of commit activity

Python 1 GPL-3.0 0 15 0 Updated Feb 6, 2025
cellsino Public
Python library for generating sinograms (phase and fluorescence) of cell phantoms for testing tomographic reconstruction algorithms

RI-imaging/cellsino's past year of commit activity

Python 4 BSD-3-Clause 2 4 0 Updated Feb 6, 2025
DryMass Public
manipulation and analysis of phase microscopy data

RI-imaging/DryMass's past year of commit activity

Python 3 MIT 1 5 (1 issue needs help) 0 Updated Feb 6, 2025

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