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RUB Bioinformatics Group · GitHub

RUB Bioinformatics Group

Bioinformatics focused Deep Learning, Image Analysis and Skeletonization.

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  1. VesselExpress VesselExpress Public

    🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes

    Python 56 8

  2. OpenVibSpec OpenVibSpec Public

    Open source python packages for the work in vibrational spectroscopy

    Python 10 7

  3. omnisphero-cnn omnisphero-cnn Public

    Training and prediction scripts of CNN models for neuron and oligo detection

    Python 3

  4. HT-PropagatedNeuriteSkeletonization HT-PropagatedNeuriteSkeletonization Public

    High Throughput Durix Skeletonization for neurite outgrowth of in vitro neuron cell culture

    C++ 3

  5. DimensionalityReduction DimensionalityReduction Public

    Open source python packages to perform dimensionality reduction with spectroscopic datasets

    Python 3

  6. CellomicsArrayScanPuzzleHelper CellomicsArrayScanPuzzleHelper Public

    Java 2

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