RitAreaSciencePark
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ZigZagLLMs ZigZagLLMs Public
Persistent Topological Features in Large Language Models
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token_geometry token_geometry Public
Geometry of Tokens in Internal Representations of Large Language Models
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ESM3-PPISites ESM3-PPISites Public
Protein Protein Interaction Sites Prediction - ESM3-PPISites
HTML 6
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TopoFisher TopoFisher Public
Differentiable persistent-homology pipelines for learning simulation-based inference summaries by maximizing local Gaussian Fisher information. Includes experiments on spirals, Gaussian random fiel…
Python 3
Repositories
- Protein_Crystallization_Data_Extraction Public
Computational tool that automatically retrieves, organizes, and analyses data related to protein crystallization conditions from the Protein Data Bank (PDB)
- dpc_fam_and_struct_webapp Public
DPCexplorer: An open-science, browser-based web application built with Django for the interactive exploration, search, and visualization of sequence-based (DPCfam) and structure-based (DPCstruct) protein domain metaclusters.
- information-engine Public
Code and analytical solutions for the optimal control of a mesoscopic information engine. Evaluates finite-time transport of an overdamped particle in an optical trap under costly measurement via a POMDP framework. Maps exact thermodynamic boundaries for discrete and continuous-measurement Maxwell demons.
- s3bucket-manager-app Public
Web app for governed S3 bucket management on Ceph RGW via RGWSquared, deployed on Kubernetes.
- LAGE_Metadata_Extraction Public
- sem-image-classifier-api Public
Codegen-driven async ML API platform on Kubernetes: BentoML, Redis, KrakenD, PostgreSQL usage tracking. Multi-service SEM image classification.
- bayesian-inference-nexafs Public
Automated Bayesian pipeline for NEXAFS spectroscopy: instead of single best-fit values, it recovers full posterior distributions over spectral parameters via parallel global optimisation and Hamiltonian Monte Carlo, with automated HPC diagnostics. Applied to multiplexing Ti L₂,₃ and La M edge operando data from APE-HE line at ELETTRA Syncrothron.
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