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Christian M. Schürch Laboratory · GitHub

Christian M. Schürch Laboratory

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  1. Echinococcus Echinococcus Public

    Forked from ph4s3r/echino-class

    Implementing deep learning models for the classification of Echinococcus multilocularis infection in human liver tissue

    Jupyter Notebook 1

  2. CODEX CODEX Public

    Forked from nolanlab/CODEX

    Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentation

    Java

  3. NeighborhoodCoordination NeighborhoodCoordination Public

    Forked from nolanlab/NeighborhoodCoordination

    Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive front"

    Jupyter Notebook

  4. CellSeg-CRISP CellSeg-CRISP Public

    Forked from will-yx/CellSeg-CRISP

    Modified CellSeg nuclei segmenter that is compatible with stitched output images of the CRISP-CODEX processor

    Python

  5. CRISP-CODEX-Processor CRISP-CODEX-Processor Public

    Forked from will-yx/CRISP-CODEX-Processor

    Convolutional Registration of Images at Sub-Pixel resolution

    Python

  6. SpatialScore SpatialScore Public

    Forked from nolanlab/SpatialScore

    R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in cutaneous T cell lymphoma".

    R 1

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