The Jackson Laboratory

The Jackson Laboratory: Leading the search for tomorrow's cures.

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Bar Harbor, ME | Farmington, CT | Sacramento, CA
https://www.jax.org/

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SVE SVE Public

Python 51 11
LIRICAL LIRICAL Public

LIkelihood Ratio Interpretation of Clinical AbnormaLities

Java 48 15
ezomero ezomero Public

A module with convenience functions for writing Python code that interacts with OMERO.

Python 47 17
Picky Picky Public

Structural Variants Pipeline for Long Reads

Perl 45 6
zarrdataset zarrdataset Public

A dataset for loading zarr files to be used in machine learning training pipelines

Python 37 4
JAXBD2K-ShortCourse JAXBD2K-ShortCourse Public

This repository contains course materials from JAX-BD2K workshop.

Shell 33 6

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STQ Public
Spatial Transcriptomics Quantification pipeline for 10x Visium and H&E-stained whole slide images

TheJacksonLaboratory/STQ's past year of commit activity

Nextflow 27 MIT 4 2 0 Updated Aug 29, 2026
DccXmlGenerator Public
This is the Python version of the DCC XML file generator.

TheJacksonLaboratory/DccXmlGenerator's past year of commit activity

Python 0 0 0 0 Updated Aug 28, 2026
sci-image-visualizer Public
Browser-based scientific image visualization for Angular — OpenSeadragon (WSI), Plotly (2D/3D) and napari-js (WebGPU) rendering, region/annotation editing, and in-browser SAM segmentation. Extracted from jit-ui #80.

TheJacksonLaboratory/sci-image-visualizer's past year of commit activity

TypeScript 3 MIT 1 1 1 Updated Aug 27, 2026
napari-js Public
WebGPU rendering engine porting napari's visualization model to the browser.

TheJacksonLaboratory/napari-js's past year of commit activity

TypeScript 1 MIT 0 0 0 Updated Aug 27, 2026
cellpose-js Public
Browser-side cellular segmentation via Cellpose-SAM, running on WebGPU.

TheJacksonLaboratory/cellpose-js's past year of commit activity

TypeScript 1 MIT 1 0 0 Updated Aug 26, 2026
ontology-annotation-network Public
A rest-api to serve a neo4j database of supported ontology annotations.

TheJacksonLaboratory/ontology-annotation-network's past year of commit activity

Java 3 1 0 2 Updated Aug 26, 2026
PhenopacketGenerator Public archive
Generate a phenopacket for use with LIRICAL or Exomiser

TheJacksonLaboratory/PhenopacketGenerator's past year of commit activity

Java 7 BSD-3-Clause 1 0 0 Updated Aug 26, 2026
image-processing-ia Public Forked from datacarpentry/image-processing
Image Processing with Python

TheJacksonLaboratory/image-processing-ia's past year of commit activity

HTML 0 128 0 0 Updated Aug 25, 2026
rit-imageanalysis-containers Public
Making it easier for users to spin up a Singularity container with image analysis tools from a slurm-based cluster

TheJacksonLaboratory/rit-imageanalysis-containers's past year of commit activity

Shell 5 MIT 3 2 0 Updated Aug 24, 2026
hpo-web Public
a web application to search and navigate the Human Phenotype Ontology (HPO)

TheJacksonLaboratory/hpo-web's past year of commit activity

HTML 15 13 12 1 Updated Aug 24, 2026