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Report abuseI work on statistics and machine learning in biomedical data. At the moment I am working on the QuPath project, helping to improve and expand QuPath's ability to perform image analysis workflows in a variety of data types. Previously I worked on modelling of eQTLs using allele specific expression in celltype-specific studies of immune-mediated diseases, and before that on quantifying expression heterogeneity in single cell RNAseq data using a Bayesian approach.
I maintain some R packages:
- R-universe builds: https://alanocallaghan.r-universe.dev/builds
- CRAN packages:
- Bioc packages:
Package Devel Release Issues Pull requests snifter densvis scater BASiCStan
I currently maintain two parts of the Bioconductor book ecosystem:
| Book/Chapter | Devel | Release | Issues | Pull requests |
|---|---|---|---|---|
| OSCA | devel | release | ||
| OSCA.multisample | devel | release |
I also contribute to:
Some other stuff:
- plotlyutils: cool plotting ideas with plotly
- shinystats: shiny apps to demonstrate statistical ideas.
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