feat: visualization of duplicates - #288
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fxwiegand
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Dec 12, 2024
fxwiegand
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Thx a lot! See comment in code.
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resources/plot.vl.json
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| "condition":{"test": "(datum.flags & 1024) > 0", | ||
| "value": "#8A2BE2"}, |
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Nice that seems to work! Great idea using the mapq border for the duplicate indication. Would be great if you could format the json file. Can be easily done using jpf -f resources/plot.vl.json. Install via conda install jpf.
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Bumps [tokio](https://github.com/tokio-rs/tokio) from 1.42.0 to 1.43.0. - [Release notes](https://github.com/tokio-rs/tokio/releases) - [Commits](tokio-rs/tokio@tokio-1.42.0...tokio-1.43.0) --- updated-dependencies: - dependency-name: tokio dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Bumps [rust-htslib](https://github.com/rust-bio/rust-htslib) from 0.48.0 to 0.49.0. - [Release notes](https://github.com/rust-bio/rust-htslib/releases) - [Changelog](https://github.com/rust-bio/rust-htslib/blob/master/CHANGELOG.md) - [Commits](rust-bio/rust-htslib@v0.48.0...v0.49.0) --- updated-dependencies: - dependency-name: rust-htslib dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Felix Wiegand <fxwiegand@wgdnet.de>
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Visualizes reads that are PCR or optical duplicates via violet bars.