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perf: Refactor coverage encoding for sparse base tracks and diffs by fxwiegand · Pull Request #379 · alignoth/alignoth · GitHub

perf: Refactor coverage encoding for sparse base tracks and diffs - #379

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fxwiegand merged 2 commits into
mainfrom
coverage-plot-data-efficiency
Oct 20, 2025
Merged

fxwiegand merged 2 commits into
mainfrom
coverage-plot-data-efficiency

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Switch to sparse encoding for A/T/G/C base coverage and delta encoding for matches. Update Vega-Lite transform logic and tests accordingly. Fixes #375.

fxwiegand merged commit 3a42840 into main Oct 20, 2025
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fxwiegand deleted the coverage-plot-data-efficiency branch October 20, 2025 22:34

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Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 51.64%. Comparing base (f662405) to head (1114cf1).
⚠️ Report is 2 commits behind head on main.
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Additional details and impacted files
@@            Coverage Diff             @@
##             main     #379      +/-   ##
==========================================
+ Coverage   50.08%   51.64%   +1.56%     
==========================================
  Files           6        6              
  Lines         617      637      +20     
==========================================
+ Hits          309      329      +20     
  Misses        308      308              

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Improve coverage data storage

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