fix: Check for both .csi and .tbi VCF index files - #395
Merged
fxwiegand merged 3 commits intoOct 29, 2025
Merged
fxwiegand merged 3 commits into
fxwiegand merged 3 commits into
Conversation
Copy link
Copy Markdown
Collaborator
Sorry, something went wrong.
FelixMoelder
approved these changes
Oct 29, 2025
Copy link
Copy Markdown
|
⚠️ Please install the Codecov Report❌ Patch coverage is 0% with 3 lines in your changes missing coverage. Please review.
@@ Coverage Diff @@
## main #395 +/- ##
==========================================
- Coverage 50.54% 50.46% -0.08%
==========================================
Files 6 6
Lines 647 648 +1
==========================================
Hits 327 327
- Misses 320 321 +1 ☔ View full report in Codecov by Sentry.
|
Sorry, something went wrong.
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
This pull request improves the way VCF/BCF index files are detected in src/main.rs. Previously, the code only checked for the existence of a .csi index file. Now, it checks for both .csi and .tbi index files, providing more flexibility and better compatibility with different index formats.
Index file detection improvements: