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A flexible pipeline for complete analysis of bacterial genomes
Nextflow 522 81
A Python package for working with Bactopia
Python 12 3
Bactopia Documentation
MDX 4 12
Contains data used by Bactopia for testing.
Standard ML 4 2
The assembly process used by Bactopia.
Shell 3
A Nextflow plugin for Bactopia
Groovy 3
The methods used in Bactopia to gather all samples into one place
The taxonomic classification process used by Bactopia.
The SNP and InDel process used by Bactopia
Methods used by Bactopia for minmer sketching
The methods used in Bactopia for read QC
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