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Bactopia · GitHub

Bactopia

Nextflow DSL2 pipeline for the complete analysis of bacterial genomes

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  1. bactopia bactopia Public

    A flexible pipeline for complete analysis of bacterial genomes

    Nextflow 522 81

  2. bactopia-py bactopia-py Public

    A Python package for working with Bactopia

    Python 12 3

  3. bactopia.github.io bactopia.github.io Public

    Bactopia Documentation

    MDX 4 12

  4. bactopia-tests bactopia-tests Public

    Contains data used by Bactopia for testing.

    Standard ML 4 2

  5. bactopia-assembler bactopia-assembler Public

    The assembly process used by Bactopia.

    Shell 3

  6. nf-bactopia nf-bactopia Public

    A Nextflow plugin for Bactopia

    Groovy 3

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